Variant report

Variant	rs61828523
Chromosome Location	chr1:212096795-212096796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212002514..212004215-chr1:212094353..212097202,2	K562	blood:
2	chr1:212088119..212089857-chr1:212095536..212097139,2	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction
ENSG00000123684	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10494944	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61828511	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7540019	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61828523	INTS7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
4	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
5	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
6	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:212093800-212098200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:212093800-212101800	Weak transcription	Gastric	stomach
9	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
10	chr1:212094400-212098000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:212094400-212098200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:212094400-212101400	Weak transcription	Stomach Mucosa	stomach
13	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:212094600-212098400	Weak transcription	Hela-S3	cervix
15	chr1:212095400-212101800	Weak transcription	Right Atrium	heart
16	chr1:212095600-212098400	Weak transcription	A549	lung
17	chr1:212096200-212098400	Weak transcription	HepG2	liver
18	chr1:212096200-212098800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:212096600-212097200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:212096600-212097400	Enhancers	HMEC	breast
21	chr1:212096600-212101800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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