Variant report

Variant	rs61828878
Chromosome Location	chr1:173464454-173464455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173445437..173448138-chr1:173461010..173464906,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11580117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61826756	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173456800-173464600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:173457200-173466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:173457200-173466800	Weak transcription	Gastric	stomach
5	chr1:173457600-173466000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:173457800-173465000	Weak transcription	Spleen	Spleen
7	chr1:173458600-173467200	Weak transcription	HSMMtube	muscle
8	chr1:173458600-173468400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:173458600-173475600	Weak transcription	Fetal Kidney	kidney
10	chr1:173458600-173476600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:173458800-173464800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:173458800-173465000	Weak transcription	K562	blood
13	chr1:173458800-173466200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:173458800-173470400	Weak transcription	Ovary	ovary
15	chr1:173459200-173466000	Weak transcription	Adipose Nuclei	Adipose
16	chr1:173459400-173474000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:173459400-173475400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:173459600-173465200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:173459600-173470000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:173459800-173469200	Weak transcription	Left Ventricle	heart
21	chr1:173460000-173464600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:173461800-173470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:173462200-173464600	Weak transcription	Liver	Liver
24	chr1:173463000-173465000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:173464400-173465200	Enhancers	HepG2	liver
26	chr1:173464400-173466600	Enhancers	Hela-S3	cervix

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