Variant report

Variant	rs61828917
Chromosome Location	chr1:173580303-173580304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12561796	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61826793	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61826814	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61826815	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61826818	1.00[AFR][1000 genomes]
rs61827862	0.83[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61828917	ANKRD45	cis	brain	BrainEAC
rs61828917	SERPINC1	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173573400-173586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:173575600-173580600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:173578200-173580800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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