Variant report

Variant	rs61829256
Chromosome Location	chr10:4128838-4128839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4124093..4126058-chr10:4126935..4129373,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17132010	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17132103	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55729260	0.83[EUR][1000 genomes]
rs55764337	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56214219	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61829257	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61831581	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7087387	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7091317	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7476320	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4127200-4129000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4127800-4129200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:4128000-4129200	Enhancers	Fetal Brain Male	brain
4	chr10:4128200-4129000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:4128200-4129000	Enhancers	Brain Germinal Matrix	brain
6	chr10:4128200-4129000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:4128200-4129200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:4128200-4129200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:4128400-4129000	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr10:4128400-4129000	Active TSS	Aorta	Aorta
11	chr10:4128400-4129200	Flanking Active TSS	Right Ventricle	heart
12	chr10:4128400-4129600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:4128600-4129000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:4128600-4129000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:4128600-4129000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr10:4128600-4129000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:4128600-4129000	Bivalent Enhancer	Brain Substantia Nigra	brain
18	chr10:4128600-4129000	Enhancers	Fetal Intestine Small	intestine
19	chr10:4128600-4129000	Flanking Active TSS	Left Ventricle	heart
20	chr10:4128600-4129000	Flanking Active TSS	Psoas Muscle	Psoas
21	chr10:4128600-4129000	Flanking Active TSS	Right Atrium	heart
22	chr10:4128600-4129400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:4128800-4129000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:4128800-4129000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
25	chr10:4128800-4129000	Enhancers	Fetal Kidney	kidney
26	chr10:4128800-4129000	Enhancers	Ovary	ovary
27	chr10:4128800-4129000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:4128800-4129200	Enhancers	Brain Anterior Caudate	brain
29	chr10:4128800-4129200	Flanking Active TSS	Fetal Heart	heart

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