Variant report

Variant	rs61829460
Chromosome Location	chr1:210859936-210859937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61827414	1.00[AMR][1000 genomes]
rs61827451	1.00[AMR][1000 genomes]
rs61827452	1.00[AMR][1000 genomes]
rs61851018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv468083	chr1:210854815-210876192	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv549123	chr1:210854815-210876192	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210835400-210863200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:210838000-210880400	Weak transcription	Gastric	stomach
3	chr1:210845400-210866000	Weak transcription	Spleen	Spleen
4	chr1:210846000-210865600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:210846200-210862400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:210846200-210865800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:210846400-210884600	Weak transcription	Ovary	ovary
8	chr1:210847000-210860200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:210847600-210862200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:210852800-210860400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:210855800-210861800	Weak transcription	Brain Anterior Caudate	brain
12	chr1:210856000-210860600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:210856000-210863200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:210856200-210862000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:210856200-210864200	Weak transcription	Brain Substantia Nigra	brain
16	chr1:210857000-210864800	Weak transcription	Fetal Stomach	stomach
17	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:210857400-210864000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:210857800-210863200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:210857800-210870800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:210858000-210864800	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:210858000-210880400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:210859400-210860800	Enhancers	Liver	Liver
24	chr1:210859600-210860400	Enhancers	HSMMtube	muscle
25	chr1:210859800-210860000	Enhancers	Right Ventricle	heart
26	chr1:210859800-210862600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:210859800-210863800	Enhancers	HSMM	muscle
28	chr1:210859800-210865600	Weak transcription	GM12878-XiMat	blood

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