Variant report

Variant	rs61829731
Chromosome Location	chr10:3847303-3847304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:3845321..3847632-chr10:3930350..3933088,2	K562	blood:
2	chr10:3544672..3546393-chr10:3846136..3849063,2	K562	blood:
3	chr10:3846003..3848657-chr10:3886879..3889430,2	K562	blood:
4	chr10:3842625..3845056-chr10:3845647..3847558,3	MCF-7	breast:
5	chr10:3846213..3848385-chr10:3895031..3897147,2	K562	blood:
6	chr10:3846136..3847799-chr10:3877909..3879695,2	K562	blood:
7	chr10:3846663..3853057-chr10:3891702..3895719,6	MCF-7	breast:
8	chr10:3844661..3847626-chr10:3892286..3894671,2	K562	blood:
9	chr10:3822110..3831216-chr10:3843525..3857606,41	MCF-7	breast:
10	chr10:3843369..3848661-chr10:3868056..3873522,8	K562	blood:
11	chr10:3846512..3848264-chr10:3935343..3937709,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233321	Chromatin interaction
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72771221	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv540447	chr10:3777819-3847629	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv540450	chr10:3804336-3859639	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv540451	chr10:3804336-3868002	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv540453	chr10:3811996-3847629	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv540455	chr10:3820854-3847629	Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	46 gene(s)	inside rSNPs	n/a
7	nsv540456	chr10:3820854-3868002	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	n/a
8	nsv540457	chr10:3822531-3847629	Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	46 gene(s)	inside rSNPs	n/a
9	nsv1045571	chr10:3839308-3874184	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	nsv540458	chr10:3839308-3874184	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3833000-3847600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:3843000-3847800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr10:3843000-3852000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:3843400-3848200	Weak transcription	Spleen	Spleen
5	chr10:3844400-3847600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:3844800-3847400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr10:3844800-3847600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:3844800-3850000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:3844800-3854600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:3844800-3854600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:3845000-3848200	Enhancers	Stomach Mucosa	stomach
12	chr10:3845000-3850600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:3845000-3851200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:3845000-3851200	Enhancers	HepG2	liver
15	chr10:3845000-3854600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:3845000-3854600	Enhancers	Primary T cells from cord blood	blood
17	chr10:3845000-3854600	Enhancers	Fetal Thymus	thymus
18	chr10:3845200-3847600	Weak transcription	Right Ventricle	heart
19	chr10:3845200-3849600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:3845200-3849600	Flanking Active TSS	A549	lung
21	chr10:3845200-3849800	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:3845200-3850200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:3845400-3847600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr10:3845400-3847600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:3845400-3848600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:3845400-3849200	Weak transcription	Gastric	stomach
27	chr10:3845400-3850800	Weak transcription	Fetal Kidney	kidney
28	chr10:3845400-3850800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:3845400-3853200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:3845600-3847800	Enhancers	NH-A	brain
31	chr10:3845600-3850400	Enhancers	Thymus	Thymus
32	chr10:3845800-3847600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:3845800-3847600	Enhancers	Hela-S3	cervix
34	chr10:3845800-3847600	Enhancers	HSMM	muscle
35	chr10:3845800-3849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:3845800-3849800	Enhancers	Brain Hippocampus Middle	brain
37	chr10:3846000-3848400	Weak transcription	Liver	Liver
38	chr10:3846000-3850400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:3846000-3850800	Enhancers	Fetal Heart	heart
40	chr10:3846200-3847600	Enhancers	HUVEC	blood vessel
41	chr10:3846200-3847800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:3846200-3852800	Enhancers	NHEK	skin
43	chr10:3846400-3847400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr10:3846400-3847600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:3846400-3847800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr10:3846400-3848600	Flanking Active TSS	Dnd41	blood
47	chr10:3846400-3848800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:3846400-3849200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:3846400-3851000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:3846400-3851200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links