Variant report

Variant	rs61829733
Chromosome Location	chr10:3850876-3850877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3838224..3841156-chr10:3850289..3853010,2	MCF-7	breast:
2	chr10:3850418..3854705-chr10:3877438..3880204,3	K562	blood:
3	chr10:3846663..3853057-chr10:3891702..3895719,6	MCF-7	breast:
4	chr10:3849778..3852295-chr10:3879424..3881435,2	MCF-7	breast:
5	chr10:3822110..3831216-chr10:3843525..3857606,41	MCF-7	breast:
6	chr10:3850046..3852996-chr10:3896621..3900254,3	K562	blood:
7	chr10:3565403..3568121-chr10:3849811..3852456,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508267	1.00[ASN][1000 genomes]
rs10508268	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252113	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12245875	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12248147	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12268277	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12761012	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17249633	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34180227	0.91[EUR][1000 genomes]
rs34414469	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61829729	0.88[ASN][1000 genomes]
rs61829734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv540450	chr10:3804336-3859639	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv540451	chr10:3804336-3868002	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv540456	chr10:3820854-3868002	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	n/a
5	nsv1045571	chr10:3839308-3874184	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv540458	chr10:3839308-3874184	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3843000-3852000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:3844800-3854600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:3844800-3854600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:3845000-3851200	Enhancers	Fetal Muscle Leg	muscle
5	chr10:3845000-3851200	Enhancers	HepG2	liver
6	chr10:3845000-3854600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:3845000-3854600	Enhancers	Primary T cells from cord blood	blood
8	chr10:3845000-3854600	Enhancers	Fetal Thymus	thymus
9	chr10:3845400-3853200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:3846200-3852800	Enhancers	NHEK	skin
11	chr10:3846400-3851000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:3846400-3851200	Enhancers	Fetal Lung	lung
13	chr10:3846600-3852000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:3846600-3852800	Enhancers	HMEC	breast
15	chr10:3846800-3854600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:3847400-3854600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:3847400-3854600	Enhancers	Fetal Intestine Large	intestine
18	chr10:3847600-3852400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:3847600-3854600	Enhancers	Fetal Intestine Small	intestine
20	chr10:3847800-3851600	Enhancers	Right Atrium	heart
21	chr10:3847800-3851800	Enhancers	Small Intestine	intestine
22	chr10:3847800-3852000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:3847800-3852000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:3847800-3852200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:3847800-3852400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:3847800-3852400	Enhancers	Left Ventricle	heart
27	chr10:3847800-3852400	Enhancers	Pancreas	Pancrea
28	chr10:3847800-3852800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:3847800-3853600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:3848000-3851200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:3848000-3853600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:3848000-3854600	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:3848200-3855200	Enhancers	Placenta Amnion	Placenta Amnion
34	chr10:3848400-3852200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:3848600-3851400	Enhancers	Stomach Smooth Muscle	stomach
36	chr10:3848600-3852800	Enhancers	Hela-S3	cervix
37	chr10:3848600-3854600	Enhancers	Stomach Mucosa	stomach
38	chr10:3848800-3851400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:3848800-3851600	Enhancers	K562	blood
40	chr10:3848800-3851800	Enhancers	GM12878-XiMat	blood
41	chr10:3848800-3852800	Enhancers	HUVEC	blood vessel
42	chr10:3848800-3853400	Weak transcription	Brain Substantia Nigra	brain
43	chr10:3849000-3851000	Enhancers	HSMMtube	muscle
44	chr10:3849000-3851800	Enhancers	Liver	Liver
45	chr10:3849200-3852000	Enhancers	Dnd41	blood
46	chr10:3849200-3853400	Weak transcription	Brain Anterior Caudate	brain
47	chr10:3849400-3852200	Enhancers	NH-A	brain
48	chr10:3849400-3852400	Weak transcription	Primary B cells from cord blood	blood
49	chr10:3849400-3853600	Enhancers	HSMM	muscle
50	chr10:3849400-3854400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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