Variant report

Variant	rs61829922
Chromosome Location	chr1:185907816-185907817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12070701	0.84[EUR][1000 genomes]
rs55890842	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61829921	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61829929	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61831263	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185892400-185909800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
3	chr1:185903200-185913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:185904600-185908200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:185907200-185908000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr1:185907400-185908000	Enhancers	Hela-S3	cervix
7	chr1:185907400-185908600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:185907600-185908000	Enhancers	Fetal Kidney	kidney
9	chr1:185907600-185908800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:185907800-185908000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:185907800-185908400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:185907800-185908800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:185907800-185908800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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