Variant report

Variant	rs61830020
Chromosome Location	chr1:215588035-215588036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1039716	0.89[ASN][1000 genomes]
rs1876406	0.82[AMR][1000 genomes]
rs2174771	0.92[EUR][1000 genomes]
rs4655405	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5029062	0.87[ASN][1000 genomes]
rs60572271	0.83[EUR][1000 genomes]
rs6702970	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7522598	0.87[ASN][1000 genomes]
rs7556562	0.92[EUR][1000 genomes]
rs973197	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215578400-215589800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215584600-215588800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:215585400-215588800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:215585600-215588800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr1:215588000-215588400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr1:215588000-215588800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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