Variant report

Variant	rs61831772
Chromosome Location	chr10:1463042-1463043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1462956..1463735-chr10:1573069..1574036,3	MCF-7	breast:
2	chr10:1462723..1464898-chr10:1498013..1500643,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11250506	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17156289	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3001049	0.96[ASN][1000 genomes]
rs4880507	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61831771	0.96[ASN][1000 genomes]
rs61831773	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079958	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1045618	chr10:1179519-1537451	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1047911	chr10:1182123-1515126	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1046041	chr10:1195214-2189155	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
10	nsv894732	chr10:1230968-1492512	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1037054	chr10:1232041-1865296	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv540413	chr10:1232041-1865296	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv549769	chr10:1244020-1764966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv549786	chr10:1293100-1904598	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv527999	chr10:1367514-1464892	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv2757359	chr10:1442709-1463158	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2759724	chr10:1442709-1463158	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1461600-1463200	Enhancers	Liver	Liver
2	chr10:1461600-1463400	Enhancers	Pancreas	Pancrea
3	chr10:1462400-1463200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
4	chr10:1462400-1463600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
5	chr10:1462400-1463600	Enhancers	Fetal Thymus	thymus
6	chr10:1462400-1463600	Flanking Active TSS	Dnd41	blood
7	chr10:1462600-1463200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr10:1462600-1463400	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:1462600-1463400	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:1462600-1463400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr10:1462600-1463400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:1462600-1463400	Active TSS	Brain Cingulate Gyrus	brain
13	chr10:1462600-1463400	Active TSS	Brain Germinal Matrix	brain
14	chr10:1462600-1463400	Active TSS	Fetal Brain Female	brain
15	chr10:1462600-1463400	Enhancers	GM12878-XiMat	blood
16	chr10:1462800-1463200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr10:1462800-1463200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr10:1462800-1463200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:1462800-1463200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:1462800-1463200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:1462800-1463200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:1462800-1463200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:1462800-1463200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:1462800-1463200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr10:1462800-1463200	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr10:1462800-1463200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
27	chr10:1462800-1463200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr10:1462800-1463200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:1462800-1463200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr10:1462800-1463200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr10:1462800-1463200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:1462800-1463200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:1462800-1463200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:1462800-1463200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:1462800-1463200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:1462800-1463200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:1462800-1463200	Bivalent Enhancer	Adipose Nuclei	Adipose
38	chr10:1462800-1463200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:1462800-1463200	Active TSS	Brain Substantia Nigra	brain
40	chr10:1462800-1463200	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr10:1462800-1463200	Active TSS	Fetal Intestine Large	intestine
42	chr10:1462800-1463200	Active TSS	Fetal Intestine Small	intestine
43	chr10:1462800-1463200	Bivalent/Poised TSS	Fetal Stomach	stomach
44	chr10:1462800-1463200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
45	chr10:1462800-1463200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
46	chr10:1462800-1463200	Active TSS	Rectal Smooth Muscle	rectum
47	chr10:1462800-1463200	Bivalent/Poised TSS	Stomach Mucosa	stomach
48	chr10:1462800-1463200	Bivalent/Poised TSS	A549	lung
49	chr10:1462800-1463400	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr10:1462800-1463400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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