Variant report

Variant	rs61832956
Chromosome Location	chr10:5940247-5940248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr10:5940139-5940544	K562	blood:	n/a	n/a
2	POLR2A	chr10:5936364-5940412	K562	blood:	n/a	n/a
3	RCOR1	chr10:5940188-5940486	K562	blood:	n/a	n/a
4	POLR2A	chr10:5937655-5940424	K562	blood:	n/a	n/a
5	POLR2A	chr10:5939928-5940321	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr10:5939938-5940520	K562	blood:	n/a	n/a
7	TBL1XR1	chr10:5939445-5940409	K562	blood:	n/a	n/a
8	MYC	chr10:5940185-5940406	K562	blood:	n/a	n/a
9	MAX	chr10:5940064-5940394	K562	blood:	n/a	n/a
10	ELF1	chr10:5940010-5940444	K562	blood:	n/a	chr10:5940227-5940240
11	EP300	chr10:5939453-5940451	K562	blood:	n/a	n/a
12	POLR2A	chr10:5939984-5940419	K562	blood:	n/a	n/a
13	MYC	chr10:5940108-5940469	K562	blood:	n/a	n/a
14	TBP	chr10:5940076-5940449	K562	blood:	n/a	n/a
15	POLR2A	chr10:5938080-5940375	K562	blood:	n/a	n/a
16	IRF1	chr10:5940212-5940412	K562	blood:	n/a	n/a
17	POLR2A	chr10:5940044-5940539	HepG2	liver:	n/a	n/a
18	ELF1	chr10:5940048-5940380	K562	blood:	n/a	chr10:5940227-5940240
19	POLR2A	chr10:5939877-5940378	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5916960..5919162-chr10:5939258..5940829,2	K562	blood:
2	chr10:5939649..5941225-chr10:5989883..5992234,2	K562	blood:
3	chr10:5934666..5939071-chr10:5940230..5944610,6	MCF-7	breast:
4	chr10:5940113..5941685-chr10:5944355..5946224,2	MCF-7	breast:
5	chr10:5939831..5941896-chr10:5955993..5958774,2	MCF-7	breast:
6	chr10:5939207..5941902-chr10:5943470..5945355,2	MCF-7	breast:

No data

Variant related genes	Relation type
FBXO18	TF binding region
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11818118	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41290313	0.81[EUR][1000 genomes]
rs41290315	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41290317	0.82[EUR][1000 genomes]
rs41302974	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55639163	0.82[EUR][1000 genomes]
rs55696216	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55803234	0.82[EUR][1000 genomes]
rs58322448	0.82[EUR][1000 genomes]
rs59647667	0.82[EUR][1000 genomes]
rs61832957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61832958	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61834494	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61834496	0.81[EUR][1000 genomes]
rs61834504	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61834507	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61834508	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7088087	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7091091	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5933200-5948200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:5933200-5949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:5933200-5977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:5933400-5948200	Weak transcription	Ovary	ovary
5	chr10:5933400-5948400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:5933400-5949800	Weak transcription	Fetal Brain Male	brain
7	chr10:5933600-5948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:5933600-5951600	Weak transcription	Stomach Mucosa	stomach
9	chr10:5933800-5941200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:5934600-5941000	Strong transcription	NHEK	skin
11	chr10:5934800-5948000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:5935200-5941800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:5935200-5947400	Weak transcription	Small Intestine	intestine
14	chr10:5935400-5940400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:5935400-5941200	Strong transcription	Fetal Lung	lung
16	chr10:5935600-5943000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:5935600-5962000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:5935800-5940400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:5935800-5940400	Strong transcription	Osteobl	bone
20	chr10:5936000-5940400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:5936000-5940400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr10:5936000-5940800	Transcr. at gene 5' and 3'	K562	blood
23	chr10:5936000-5941000	Strong transcription	Liver	Liver
24	chr10:5936200-5941000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:5936200-5941000	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:5936400-5940400	Strong transcription	Rectal Smooth Muscle	rectum
27	chr10:5936400-5940600	Strong transcription	Fetal Brain Female	brain
28	chr10:5936400-5941000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:5936600-5952600	Weak transcription	Hela-S3	cervix
30	chr10:5936800-5953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:5937000-5941000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:5937200-5947600	Weak transcription	Psoas Muscle	Psoas
33	chr10:5937200-5948000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:5937200-5948000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:5937200-5948400	Weak transcription	Fetal Kidney	kidney
36	chr10:5937400-5948200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:5937800-5940400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:5937800-5947600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:5937800-5947600	Weak transcription	HSMM	muscle
40	chr10:5937800-5948000	Weak transcription	Brain Angular Gyrus	brain
41	chr10:5937800-5948200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:5938000-5947600	Weak transcription	HSMMtube	muscle
43	chr10:5938000-5947800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:5938000-5948000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:5938000-5948200	Weak transcription	HMEC	breast
46	chr10:5938000-5950800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:5938200-5944000	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:5938200-5947200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:5938200-5947600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:5938200-5947800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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