Variant report

Variant	rs61834326
Chromosome Location	chr1:227499881-227499882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227490028..227493033-chr1:227499168..227502183,4	K562	blood:
2	chr1:227499595..227501677-chr1:227627472..227629902,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10916112	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10916113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10916116	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10916125	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11576239	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11584325	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11585910	1.00[AMR][1000 genomes]
rs12119153	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12123597	0.85[AMR][1000 genomes]
rs12128174	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12131061	0.92[AMR][1000 genomes]
rs12131459	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12131933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133230	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12133633	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12138092	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12138364	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12138383	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12138664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144205	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12746316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754677	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12755770	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1513607	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1513613	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17613235	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2063661	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28648445	1.00[AMR][1000 genomes]
rs34113967	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702208	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34897490	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35160496	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35952573	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4308948	0.92[AMR][1000 genomes]
rs61834323	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834324	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834590	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61834625	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61834626	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6660168	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6675408	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675572	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6678714	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6697583	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512871	0.85[AMR][1000 genomes]
rs7518813	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539662	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7543419	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7548118	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv534002	chr1:227315186-228047108	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv873242	chr1:227371906-227579344	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv549271	chr1:227411003-227581017	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1001353	chr1:227474785-227660691	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227462600-227500200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:227469200-227500200	Weak transcription	Left Ventricle	heart
3	chr1:227469200-227502600	Weak transcription	HSMM	muscle
4	chr1:227469600-227501800	Weak transcription	Fetal Stomach	stomach
5	chr1:227475000-227502000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:227475200-227500200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:227483600-227500200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:227483800-227500400	Weak transcription	Right Atrium	heart
9	chr1:227487000-227500200	Weak transcription	HMEC	breast
10	chr1:227487000-227501800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:227487000-227501800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:227487000-227502000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:227487600-227502400	Weak transcription	Osteobl	bone
14	chr1:227487800-227500200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:227487800-227500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:227487800-227501400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:227488000-227501800	Weak transcription	A549	lung
18	chr1:227490200-227503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:227491400-227501400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:227492600-227503400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:227494200-227500200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:227494400-227500200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:227495000-227500200	Weak transcription	Brain Substantia Nigra	brain
24	chr1:227495000-227503400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:227496200-227500200	Weak transcription	Pancreas	Pancrea
26	chr1:227496200-227502000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:227496200-227504800	Weak transcription	Gastric	stomach
28	chr1:227496400-227501200	Enhancers	HUVEC	blood vessel
29	chr1:227496400-227501800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr1:227496400-227502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:227496800-227501800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:227496800-227502000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:227497000-227501600	Weak transcription	NHDF-Ad	bronchial
34	chr1:227497200-227501800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:227497200-227502600	Weak transcription	Fetal Intestine Large	intestine
36	chr1:227497600-227501000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr1:227497600-227501800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:227497600-227502000	Weak transcription	Liver	Liver
39	chr1:227497800-227500200	Weak transcription	Ovary	ovary
40	chr1:227497800-227501400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr1:227498000-227500400	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:227498000-227501800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:227498200-227500200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:227498200-227500400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:227498200-227501800	Weak transcription	Brain Anterior Caudate	brain
46	chr1:227498200-227501800	Weak transcription	Fetal Lung	lung
47	chr1:227498200-227502000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr1:227498200-227503000	Weak transcription	Brain Germinal Matrix	brain
49	chr1:227498200-227503200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr1:227498400-227500200	Weak transcription	NHEK	skin

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