Variant report

Variant	rs61834509
Chromosome Location	chr10:5980513-5980514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5973930..5977726-chr10:5979603..5983323,6	K562	blood:
2	chr10:5976188..5979309-chr10:5979959..5984368,9	K562	blood:

Variant related genes	Relation type
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs41290313	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41290317	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41302974	0.91[EUR][1000 genomes]
rs55639163	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55696216	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55803234	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58322448	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59647667	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61834494	0.83[EUR][1000 genomes]
rs61834496	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61834504	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61834507	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61834508	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5944000-5981600	Strong transcription	Fetal Intestine Small	intestine
2	chr10:5944600-5981200	Strong transcription	Fetal Thymus	thymus
3	chr10:5945800-5980800	Strong transcription	Thymus	Thymus
4	chr10:5947000-5980800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr10:5947000-5981600	Strong transcription	Placenta	Placenta
6	chr10:5947200-5981000	Strong transcription	Fetal Intestine Large	intestine
7	chr10:5947400-5981200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:5947600-5981000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:5947600-5981000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:5947600-5981000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:5947600-5981000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:5947600-5981200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:5948400-5981000	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:5948400-5981000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr10:5948600-5981000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr10:5948800-5981000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:5948800-5981000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:5948800-5981600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:5950200-5981000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:5950600-5981000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:5950600-5981000	Strong transcription	Lung	lung
22	chr10:5950600-5981000	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:5950600-5981200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:5950800-5980600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:5950800-5980800	Strong transcription	GM12878-XiMat	blood
26	chr10:5952000-5985000	Weak transcription	Stomach Mucosa	stomach
27	chr10:5955000-5981400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:5960600-5981200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:5961000-5981200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:5965800-5981000	Strong transcription	A549	lung
31	chr10:5966200-5983600	Weak transcription	Right Atrium	heart
32	chr10:5969400-5982800	Strong transcription	Fetal Stomach	stomach
33	chr10:5969600-5987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:5969600-6012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:5969800-5980800	Strong transcription	HSMMtube	muscle
36	chr10:5969800-5981000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr10:5969800-5981200	Strong transcription	Fetal Muscle Leg	muscle
38	chr10:5970000-5981600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:5970400-5981000	Strong transcription	Osteobl	bone
40	chr10:5971200-5981000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:5971400-6013200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:5971800-5983400	Weak transcription	Psoas Muscle	Psoas
43	chr10:5972200-5981000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr10:5972400-5981000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:5972800-5986800	Weak transcription	Hela-S3	cervix
46	chr10:5973000-5980800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:5973400-5985600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:5974600-5980800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:5974800-5981000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr10:5975000-5981200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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