Variant report

Variant	rs61835093
Chromosome Location	chr1:166057564-166057565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UCK2-2	chr1:166056324-166059452	NONHSAT007345

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10494452	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12132376	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17423493	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17423848	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61835124	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61835125	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61835126	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61835127	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61835129	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166049000-166067200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:166051000-166059400	Weak transcription	Right Atrium	heart
3	chr1:166051000-166059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:166051200-166058800	Weak transcription	Adipose Nuclei	Adipose
5	chr1:166051200-166059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:166051200-166060000	Weak transcription	Right Ventricle	heart
7	chr1:166051400-166068400	Weak transcription	Pancreas	Pancrea
8	chr1:166051600-166064400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:166051800-166058600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:166053400-166059000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:166053600-166059000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:166054000-166058800	Weak transcription	GM12878-XiMat	blood
13	chr1:166054200-166058600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:166054600-166059000	Weak transcription	Spleen	Spleen
15	chr1:166055000-166059000	Weak transcription	Left Ventricle	heart
16	chr1:166055600-166064600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:166056000-166066200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:166056200-166058600	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:166056200-166058800	Weak transcription	Lung	lung
20	chr1:166056800-166058400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:166057400-166057600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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