Variant report

Variant	rs61836669
Chromosome Location	chr1:239918031-239918032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1030591	0.94[EUR][1000 genomes]
rs10925968	0.81[EUR][1000 genomes]
rs10925969	0.81[EUR][1000 genomes]
rs1135	0.94[EUR][1000 genomes]
rs12059584	0.94[EUR][1000 genomes]
rs12062155	0.81[EUR][1000 genomes]
rs12062192	0.94[EUR][1000 genomes]
rs12066872	0.94[EUR][1000 genomes]
rs12093210	0.94[EUR][1000 genomes]
rs12354162	0.94[EUR][1000 genomes]
rs13376649	0.94[EUR][1000 genomes]
rs16832149	0.82[EUR][1000 genomes]
rs16838623	0.82[EUR][1000 genomes]
rs16838631	0.88[EUR][1000 genomes]
rs16838669	0.88[EUR][1000 genomes]
rs16838681	0.88[EUR][1000 genomes]
rs16838689	0.88[EUR][1000 genomes]
rs16838720	0.83[EUR][1000 genomes]
rs16838848	0.94[EUR][1000 genomes]
rs16838871	0.81[EUR][1000 genomes]
rs16838874	0.81[EUR][1000 genomes]
rs16838878	0.94[EUR][1000 genomes]
rs28448804	0.88[EUR][1000 genomes]
rs496302	0.86[ASN][1000 genomes]
rs61834776	0.82[EUR][1000 genomes]
rs61834783	0.82[EUR][1000 genomes]
rs61834785	0.88[EUR][1000 genomes]
rs61834786	0.88[EUR][1000 genomes]
rs61834816	0.88[EUR][1000 genomes]
rs61834817	0.88[EUR][1000 genomes]
rs61834822	0.83[EUR][1000 genomes]
rs61834823	0.83[EUR][1000 genomes]
rs61834825	0.83[EUR][1000 genomes]
rs61834826	0.83[EUR][1000 genomes]
rs61834828	0.94[EUR][1000 genomes]
rs61834837	0.94[EUR][1000 genomes]
rs61834838	0.94[EUR][1000 genomes]
rs61834839	0.94[EUR][1000 genomes]
rs61834840	0.94[EUR][1000 genomes]
rs61834842	0.94[EUR][1000 genomes]
rs61834844	0.94[EUR][1000 genomes]
rs61834845	0.81[EUR][1000 genomes]
rs61834846	0.81[EUR][1000 genomes]
rs61834847	0.94[EUR][1000 genomes]
rs6661636	0.83[EUR][1000 genomes]
rs686360	0.86[ASN][1000 genomes]
rs7516378	0.94[EUR][1000 genomes]
rs7527723	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549435	chr1:239375010-239974006	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3377526	chr1:239623743-240111639	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv873351	chr1:239636613-240324200	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2757778	chr1:239766094-240389504	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv2759009	chr1:239766094-240389504	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv35011	chr1:239907420-240298959	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv2756891	chr1:239907420-240308147	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv873353	chr1:239913038-240253320	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv873354	chr1:239913038-240303322	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv827531	chr1:239914745-240300206	Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239889000-239949800	Weak transcription	Pancreas	Pancrea
2	chr1:239891200-239918400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:239906000-239923000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:239914000-239924800	Weak transcription	Gastric	stomach
5	chr1:239915600-239925000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:239916800-239918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:239917600-239919200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:239917600-239919600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:239917600-239919800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:239917800-239918200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:239917800-239918200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:239917800-239918200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:239917800-239918400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:239917800-239919000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:239917800-239919000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:239917800-239920000	Enhancers	Fetal Intestine Large	intestine
17	chr1:239918000-239918400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:239918000-239937000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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