Variant report

Variant	rs61838676
Chromosome Location	chr10:49595152-49595153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
2	chr10:49592537..49595481-chr10:49609552..49611055,2	K562	blood:
3	chr10:49587453..49590173-chr10:49593697..49595801,2	K562	blood:
4	chr10:49571674..49573268-chr10:49594315..49596996,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11101311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259267	1.00[ASN][1000 genomes]
rs17010433	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697960	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17697978	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17698002	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17770456	1.00[ASN][1000 genomes]
rs17770535	1.00[ASN][1000 genomes]
rs17770554	1.00[ASN][1000 genomes]
rs1867585	0.85[EUR][1000 genomes]
rs1867587	0.81[EUR][1000 genomes]
rs1978997	1.00[ASN][1000 genomes]
rs35009243	1.00[ASN][1000 genomes]
rs3730156	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3730157	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3730158	0.82[AMR][1000 genomes]
rs4354648	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57115982	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57990560	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838674	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838696	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838703	0.88[AFR][1000 genomes]
rs61838706	0.98[EUR][1000 genomes]
rs61840551	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61840552	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61840553	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61840555	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724124	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7478030	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49590200-49596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:49590200-49596800	Weak transcription	Left Ventricle	heart
4	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:49590200-49598800	Weak transcription	A549	lung
6	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
7	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:49591200-49595400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:49591800-49597200	Weak transcription	NHDF-Ad	bronchial
12	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
14	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:49592600-49595800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:49592600-49597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:49592600-49597600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:49592800-49597400	Weak transcription	HMEC	breast
20	chr10:49593000-49595600	Weak transcription	K562	blood
21	chr10:49593000-49596800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:49593000-49597400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:49593000-49598000	Weak transcription	Right Atrium	heart
24	chr10:49593000-49599000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:49593200-49597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:49593200-49597200	Weak transcription	Fetal Heart	heart
27	chr10:49593200-49597600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:49593200-49599000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:49593200-49607600	Weak transcription	Fetal Lung	lung
30	chr10:49593400-49597400	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:49593400-49597400	Weak transcription	HSMMtube	muscle
32	chr10:49593400-49599000	Weak transcription	HSMM	muscle
33	chr10:49593600-49597200	Weak transcription	GM12878-XiMat	blood
34	chr10:49593600-49597400	Weak transcription	Fetal Kidney	kidney
35	chr10:49593600-49598800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:49594600-49595400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:49594600-49595400	Enhancers	Fetal Intestine Large	intestine
38	chr10:49595000-49596800	Weak transcription	Ovary	ovary
39	chr10:49595000-49599400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:49595000-49616000	Weak transcription	Primary B cells from cord blood	blood

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