Variant report

Variant	rs61839660
Chromosome Location	chr10:6094697-6094698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6092360..6095172-chr10:6096702..6099440,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12722483	1.00[AFR][1000 genomes]
rs12722495	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12722496	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12722508	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722522	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12722552	0.89[AMR][1000 genomes]
rs12722558	0.94[AMR][1000 genomes]
rs12722563	0.94[AMR][1000 genomes]
rs28360489	0.80[AMR][1000 genomes]
rs28360490	0.80[AMR][1000 genomes]
rs7909519	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Type 1 diabetes	22293688	GWAS catalog

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093400-6094800	Weak transcription	Colonic Mucosa	Colon
2	chr10:6093400-6094800	Weak transcription	Right Atrium	heart
3	chr10:6093400-6094800	Weak transcription	Stomach Mucosa	stomach
4	chr10:6093400-6095000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:6093400-6095400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr10:6093400-6095800	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:6093400-6095800	Weak transcription	Pancreas	Pancrea
8	chr10:6093400-6096000	Weak transcription	Hela-S3	cervix
9	chr10:6093400-6096200	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:6093400-6096200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:6093400-6096400	Enhancers	Fetal Thymus	thymus
12	chr10:6093400-6096800	Enhancers	Adipose Nuclei	Adipose
13	chr10:6093400-6097200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:6093400-6101000	Weak transcription	Psoas Muscle	Psoas
15	chr10:6093400-6102800	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:6093600-6095800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr10:6093600-6095800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:6093800-6094800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:6093800-6095400	Flanking Active TSS	GM12878-XiMat	blood
20	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
21	chr10:6094000-6094800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr10:6094000-6094800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr10:6094000-6095000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
24	chr10:6094000-6095000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:6094000-6095200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr10:6094000-6095200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:6094000-6095200	Enhancers	Brain Anterior Caudate	brain
28	chr10:6094000-6095200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr10:6094000-6095200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:6094000-6095200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:6094000-6095800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:6094000-6095800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:6094000-6096000	Enhancers	HMEC	breast
34	chr10:6094000-6097400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:6094200-6094800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:6094200-6094800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:6094200-6094800	Flanking Active TSS	Thymus	Thymus
38	chr10:6094200-6095000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:6094200-6095000	Enhancers	Right Ventricle	heart
40	chr10:6094200-6095000	Bivalent Enhancer	Dnd41	blood
41	chr10:6094200-6095400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:6094200-6095400	Weak transcription	Liver	Liver
43	chr10:6094200-6096400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr10:6094200-6097200	Enhancers	Spleen	Spleen
45	chr10:6094400-6094800	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr10:6094400-6094800	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr10:6094400-6094800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:6094400-6095000	Enhancers	Fetal Muscle Leg	muscle
49	chr10:6094400-6095000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:6094400-6095200	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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