Variant report

Variant	rs61839690
Chromosome Location	chr10:6135262-6135263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6099232..6101720-chr10:6133496..6135887,2	K562	blood:
2	chr10:6132741..6135647-chr10:6244936..6248119,3	MCF-7	breast:
3	chr10:6133090..6135580-chr10:6163939..6166361,2	K562	blood:
4	chr10:6081523..6083150-chr10:6133461..6135745,2	K562	blood:
5	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
6	chr10:6134145..6135760-chr10:6141519..6143845,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1571026	0.83[EUR][1000 genomes]
rs2274356	0.80[EUR][1000 genomes]
rs41295135	0.94[EUR][1000 genomes]
rs41295151	0.94[EUR][1000 genomes]
rs4450090	0.91[EUR][1000 genomes]
rs61839683	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6132200-6135800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:6132200-6138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:6132200-6139200	Weak transcription	Gastric	stomach
4	chr10:6132400-6135400	Enhancers	Primary B cells from cord blood	blood
5	chr10:6132400-6139000	Weak transcription	Esophagus	oesophagus
6	chr10:6132400-6139200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:6132400-6139200	Weak transcription	Aorta	Aorta
8	chr10:6132400-6139600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:6132600-6137600	Weak transcription	HSMM	muscle
10	chr10:6132600-6138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:6132600-6139000	Weak transcription	Colonic Mucosa	Colon
12	chr10:6132600-6139200	Weak transcription	Pancreas	Pancrea
13	chr10:6132800-6135800	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:6132800-6135800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6132800-6135800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:6132800-6137600	Weak transcription	Osteobl	bone
17	chr10:6132800-6137800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:6132800-6137800	Weak transcription	NHDF-Ad	bronchial
19	chr10:6132800-6137800	Weak transcription	NHLF	lung
20	chr10:6132800-6138000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:6132800-6138800	Weak transcription	Placenta	Placenta
22	chr10:6132800-6139200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:6132800-6139400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:6132800-6139600	Weak transcription	NH-A	brain
25	chr10:6132800-6143200	Weak transcription	HSMMtube	muscle
26	chr10:6132800-6145600	Weak transcription	Fetal Kidney	kidney
27	chr10:6132800-6150400	Weak transcription	Stomach Mucosa	stomach
28	chr10:6132800-6152000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:6133200-6137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:6133400-6135600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:6133400-6137000	Weak transcription	Right Ventricle	heart
32	chr10:6133400-6137200	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:6133400-6137400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:6133400-6137400	Weak transcription	Spleen	Spleen
35	chr10:6133400-6137600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:6133400-6137600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:6133400-6137800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:6133400-6138000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:6133400-6139000	Weak transcription	Fetal Intestine Large	intestine
40	chr10:6133400-6139200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:6133600-6137000	Weak transcription	Fetal Stomach	stomach
42	chr10:6133600-6138200	Enhancers	Adipose Nuclei	Adipose
43	chr10:6133800-6136800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr10:6133800-6137400	Weak transcription	Right Atrium	heart
45	chr10:6133800-6137600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:6133800-6137600	Weak transcription	Fetal Brain Male	brain
47	chr10:6133800-6139000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:6133800-6139000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:6133800-6139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:6133800-6139400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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