Variant report

Variant	rs61840274
Chromosome Location	chr1:223040270-223040271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12742619	0.98[ASN][1000 genomes]
rs17162913	0.97[ASN][1000 genomes]
rs17163533	0.98[ASN][1000 genomes]
rs2378609	0.93[ASN][1000 genomes]
rs2841041	0.92[ASN][1000 genomes]
rs34202956	0.92[ASN][1000 genomes]
rs34715037	0.92[ASN][1000 genomes]
rs35467168	0.97[ASN][1000 genomes]
rs35699059	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv873206	chr1:222985197-223124916	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223017600-223042400	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:223027000-223041000	Weak transcription	Lung	lung
3	chr1:223029800-223066800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:223035000-223054000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:223039200-223041600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:223039600-223040600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:223040200-223040600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:223040200-223040600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:223040200-223040800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:223040200-223040800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links