Variant report

Variant	rs61849880
Chromosome Location	chr10:53802584-53802585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61849878	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61849896	0.94[EUR][1000 genomes]
rs61849897	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53799600-53804600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:53800000-53808600	Weak transcription	Fetal Lung	lung
3	chr10:53801200-53806600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:53801400-53802800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:53801400-53806600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:53801400-53806600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:53801600-53805800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:53801600-53806600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:53801600-53806600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:53801800-53805800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:53802400-53802600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:53802400-53802600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:53802400-53802600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:53802400-53803200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:53802400-53803800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:53802400-53805400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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