Variant report

Variant	rs61849881
Chromosome Location	chr10:53804746-53804747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs72801487	1.00[AFR][1000 genomes]
rs72803136	1.00[AFR][1000 genomes]
rs72803138	1.00[AFR][1000 genomes]
rs72803140	1.00[AFR][1000 genomes]
rs72803144	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53800000-53808600	Weak transcription	Fetal Lung	lung
2	chr10:53801200-53806600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:53801400-53806600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:53801400-53806600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:53801600-53805800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:53801600-53806600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:53801600-53806600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:53801800-53805800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:53802400-53805400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:53802600-53806800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:53803600-53805800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:53803800-53804800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:53803800-53822800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:53804000-53806400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:53804000-53822800	Weak transcription	Aorta	Aorta
16	chr10:53804200-53805800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:53804400-53806000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr10:53804600-53804800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr10:53804600-53805800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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