Variant report

Variant	rs61852569
Chromosome Location	chr10:90736014-90736015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17446483	1.00[AFR][1000 genomes]
rs61852568	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90724800-90739000	Weak transcription	Small Intestine	intestine
2	chr10:90735200-90738800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:90735200-90739200	Weak transcription	Fetal Stomach	stomach
4	chr10:90735200-90749800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:90735400-90736400	Enhancers	Primary T cells from cord blood	blood
6	chr10:90735400-90736800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:90735400-90736800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr10:90735400-90738400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:90735400-90738800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:90735400-90738800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:90735400-90739000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:90735400-90739000	Weak transcription	HSMMtube	muscle
13	chr10:90735400-90739000	Weak transcription	NH-A	brain
14	chr10:90735400-90739200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90735400-90739600	Weak transcription	Right Atrium	heart
16	chr10:90735400-90740000	Weak transcription	Fetal Intestine Small	intestine
17	chr10:90735400-90740000	Weak transcription	Left Ventricle	heart
18	chr10:90735400-90740200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:90735400-90741200	Weak transcription	Right Ventricle	heart
20	chr10:90735600-90736400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:90735600-90736400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:90735600-90736400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:90735600-90736800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr10:90735600-90738200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:90735600-90738200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:90735600-90738200	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:90735600-90738200	Weak transcription	Fetal Lung	lung
28	chr10:90735600-90738400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:90735600-90738400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:90735600-90738400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:90735600-90738400	Weak transcription	Osteobl	bone
32	chr10:90735600-90738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:90735600-90738800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:90735600-90738800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:90735600-90738800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:90735600-90739000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:90735600-90739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:90735600-90739000	Weak transcription	Fetal Thymus	thymus
39	chr10:90735600-90739000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:90735600-90739000	Weak transcription	HMEC	breast
41	chr10:90735600-90739000	Weak transcription	NHEK	skin
42	chr10:90735600-90739200	Weak transcription	HSMM	muscle
43	chr10:90735600-90739400	Weak transcription	Adipose Nuclei	Adipose
44	chr10:90735600-90739400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:90735600-90740000	Weak transcription	Psoas Muscle	Psoas
46	chr10:90735600-90740800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:90735600-90741600	Weak transcription	Fetal Kidney	kidney
48	chr10:90735600-90746400	Weak transcription	HepG2	liver
49	chr10:90735600-90748600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:90735600-90749200	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links