Variant report

Variant	rs61854629
Chromosome Location	chr10:5357446-5357447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5355691..5358154-chr10:5359836..5362868,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10904451	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10904452	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10904453	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11253080	0.84[EUR][1000 genomes]
rs11253081	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11253084	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11253085	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253086	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11253088	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11253089	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11815186	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12570364	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12570391	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12572593	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1344354	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1344355	0.84[EUR][1000 genomes]
rs17134635	0.83[EUR][1000 genomes]
rs35175967	0.85[AMR][1000 genomes]
rs55674917	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55801200	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55987117	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56214564	0.82[AMR][1000 genomes]
rs56821071	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57797788	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59232182	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59906426	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61516976	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61854626	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61854627	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61854628	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61854630	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67729868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7476820	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7894829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7894961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896729	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7896836	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7897615	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900860	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7901719	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7901845	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7915879	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7916938	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7917116	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7917455	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7917859	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7921213	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5340400-5359800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:5348800-5358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:5356400-5358600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:5356400-5359400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:5356800-5358200	Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr10:5356800-5358200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:5356800-5358800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:5356800-5359000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:5356800-5359000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:5357000-5358200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:5357000-5358200	Weak transcription	NHEK	skin
12	chr10:5357000-5358400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:5357000-5358600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:5357000-5358800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:5357000-5359200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:5357200-5359200	Weak transcription	Thymus	Thymus
17	chr10:5357400-5357600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:5357400-5357800	Weak transcription	Dnd41	blood
19	chr10:5357400-5358600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:5357400-5359000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:5357400-5359000	Weak transcription	Fetal Thymus	thymus
22	chr10:5357400-5359200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:5357400-5359600	Weak transcription	Lung	lung

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