Variant report

Variant	rs61857738
Chromosome Location	chr10:92608039-92608040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2226116	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92605600-92610000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:92605800-92609400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:92606200-92608200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:92606200-92609200	Enhancers	NHEK	skin
6	chr10:92606400-92608200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:92606800-92609200	Weak transcription	HSMM	muscle
8	chr10:92606800-92609600	Weak transcription	Psoas Muscle	Psoas
9	chr10:92607400-92609400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:92607400-92609600	Weak transcription	HSMMtube	muscle
11	chr10:92607400-92610200	Enhancers	HMEC	breast
12	chr10:92607600-92608200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:92607600-92609200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:92607600-92609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:92607600-92609600	Weak transcription	NH-A	brain
16	chr10:92607600-92609600	Weak transcription	Osteobl	bone
17	chr10:92607800-92609600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:92607800-92609600	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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