Variant report

Variant	rs61861588
Chromosome Location	chr10:44303415-44303416
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44298175..44301035-chr10:44302749..44304944,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12357048	0.80[EUR][1000 genomes]
rs12360144	0.80[EUR][1000 genomes]
rs12360468	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44292600-44304800	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:44293400-44304600	Weak transcription	Ovary	ovary
3	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
4	chr10:44300400-44304800	Weak transcription	Fetal Kidney	kidney
5	chr10:44300600-44307400	Enhancers	Osteobl	bone
6	chr10:44300800-44306000	Weak transcription	Fetal Lung	lung
7	chr10:44301000-44304800	Weak transcription	Adipose Nuclei	Adipose
8	chr10:44301400-44303600	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:44301400-44304200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:44301400-44304200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:44301400-44307200	Enhancers	Primary T cells from cord blood	blood
12	chr10:44301600-44304600	Weak transcription	Right Atrium	heart
13	chr10:44302400-44304200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:44302400-44304200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:44302600-44304200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:44302600-44304200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:44302600-44304200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:44302600-44304200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr10:44302600-44304200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:44302600-44304200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:44302600-44304200	Enhancers	Aorta	Aorta
22	chr10:44302600-44305400	Enhancers	NH-A	brain
23	chr10:44302600-44305600	Enhancers	Dnd41	blood
24	chr10:44302800-44303600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:44302800-44303600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:44302800-44304200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:44302800-44304200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:44302800-44304200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:44303000-44303600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:44303000-44303600	Enhancers	Spleen	Spleen
31	chr10:44303000-44303600	Enhancers	GM12878-XiMat	blood
32	chr10:44303000-44303800	Enhancers	Primary B cells from peripheral blood	blood
33	chr10:44303000-44304000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:44303000-44304200	Enhancers	Fetal Thymus	thymus
35	chr10:44303000-44307400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:44303200-44303600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:44303200-44303600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:44303200-44304200	Enhancers	Primary hematopoietic stem cells	blood
39	chr10:44303200-44304400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:44303200-44304600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:44303200-44305400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:44303400-44304000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:44303400-44304000	Weak transcription	Thymus	Thymus
44	chr10:44303400-44304200	Enhancers	HUVEC	blood vessel
45	chr10:44303400-44304400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:44303400-44305000	Enhancers	NHDF-Ad	bronchial
47	chr10:44303400-44305600	Enhancers	HSMM	muscle

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