Variant report

Variant	rs61870790
Chromosome Location	chr10:91521935-91521936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91458920..91461680-chr10:91519513..91522004,2	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction
ENSG00000235100	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61853458	1.00[AFR][1000 genomes]
rs61854432	1.00[AFR][1000 genomes]
rs61869788	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61870761	1.00[AFR][1000 genomes]
rs61870791	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
3	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
7	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
11	chr10:91483200-91523600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:91485000-91532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:91492000-91522000	Weak transcription	Adipose Nuclei	Adipose
14	chr10:91504200-91531800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:91505000-91536600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:91506200-91522000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:91506400-91531200	Weak transcription	Esophagus	oesophagus
19	chr10:91506400-91539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:91506400-91544800	Weak transcription	Ovary	ovary
23	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:91506600-91522400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:91506600-91522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:91506600-91522400	Weak transcription	Lung	lung
27	chr10:91506600-91522800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:91506600-91540000	Weak transcription	Fetal Stomach	stomach
29	chr10:91506600-91540200	Weak transcription	Fetal Intestine Small	intestine
30	chr10:91506600-91540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:91506600-91542000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
33	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:91509600-91523600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:91510200-91523600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:91510400-91523600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:91511400-91523600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:91513800-91538400	Weak transcription	Psoas Muscle	Psoas
39	chr10:91514000-91523000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:91514000-91523400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:91514000-91523600	Strong transcription	Dnd41	blood
42	chr10:91514000-91523600	Strong transcription	Hela-S3	cervix
43	chr10:91514200-91523600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:91514200-91523600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:91515400-91523600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:91515800-91522400	Weak transcription	Thymus	Thymus
47	chr10:91516200-91523600	Strong transcription	HSMM	muscle
48	chr10:91517400-91523600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:91517400-91536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr10:91518000-91523400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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