Variant report

Variant	rs61871140
Chromosome Location	chr10:97724525-97724526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10509695	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786247	0.81[EUR][1000 genomes]
rs10882698	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188541	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411569	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17382898	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344425	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918976	0.80[EUR][1000 genomes]
rs56365500	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57294882	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60928707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61075650	0.92[EUR][1000 genomes]
rs61559520	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2761619	chr10:97719520-97746180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61871140	ENTPD1	cis	multi-tissue	Pritchard
rs61871140	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97720800-97731400	Weak transcription	Left Ventricle	heart
2	chr10:97722600-97725400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:97722800-97724600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:97722800-97725000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:97722800-97725000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:97722800-97729200	Weak transcription	Aorta	Aorta
7	chr10:97723000-97724800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97723000-97725400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:97723200-97724800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:97723800-97724800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:97723800-97724800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:97724000-97724600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr10:97724000-97724600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:97724000-97724800	Enhancers	Primary T cells from cord blood	blood
15	chr10:97724000-97724800	Enhancers	Primary hematopoietic stem cells	blood
16	chr10:97724000-97725400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:97724000-97725400	Enhancers	GM12878-XiMat	blood
18	chr10:97724400-97725000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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