Variant report

Variant	rs61872990
Chromosome Location	chr10:118649443-118649444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118647239..118651488-chr10:118651970..118654207,4	MCF-7	breast:
2	chr10:118647284..118650159-chr10:118653455..118655400,2	MCF-7	breast:
3	chr10:118637537..118640975-chr10:118647484..118651676,4	K562	blood:
4	chr10:118607571..118610860-chr10:118647249..118651335,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11197843	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61872990	KIAA1598	cis	Whole Blood	GTEx

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
2	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118640400-118649600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:118640800-118651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:118641000-118650600	Weak transcription	Adipose Nuclei	Adipose
7	chr10:118641800-118658800	Weak transcription	K562	blood
8	chr10:118641800-118665200	Weak transcription	HepG2	liver
9	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain
10	chr10:118642600-118652800	Weak transcription	Fetal Brain Male	brain
11	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:118643000-118650200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:118643400-118650800	Weak transcription	Aorta	Aorta
14	chr10:118643600-118649800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:118643800-118651000	Weak transcription	Brain Anterior Caudate	brain
16	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:118646400-118649600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:118646400-118652400	Weak transcription	Fetal Kidney	kidney
19	chr10:118646800-118652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:118647200-118650600	Enhancers	HSMM	muscle
21	chr10:118647200-118651000	Weak transcription	Brain Germinal Matrix	brain
22	chr10:118647200-118652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:118647400-118649600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:118648200-118652800	Weak transcription	Gastric	stomach
26	chr10:118648600-118650200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:118648600-118650600	Enhancers	HMEC	breast
28	chr10:118648600-118652600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:118648600-118652600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:118648800-118649600	Enhancers	Colonic Mucosa	Colon
31	chr10:118648800-118649800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:118648800-118650000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:118648800-118650200	Weak transcription	HSMMtube	muscle
34	chr10:118648800-118650400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:118648800-118650400	Weak transcription	Osteobl	bone
36	chr10:118648800-118651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:118648800-118652400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:118648800-118652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:118648800-118652800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:118648800-118659000	Weak transcription	Fetal Intestine Large	intestine
41	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:118649000-118649600	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr10:118649000-118649600	Enhancers	A549	lung
44	chr10:118649000-118650400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:118649000-118650600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:118649000-118652400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr10:118649000-118652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:118649200-118649600	Weak transcription	Brain Substantia Nigra	brain
49	chr10:118649200-118650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:118649200-118650200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links