Variant report

Variant	rs61875698
Chromosome Location	chr11:9350519-9350520
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10840202	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11042273	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11042290	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11042291	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11828205	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12273748	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12278189	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12290310	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12292589	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4537761	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4627080	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59246353	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61875675	0.81[AMR][1000 genomes]
rs61875692	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61875696	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61875699	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7103596	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7925801	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
7	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9337000-9350600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:9346000-9350600	Weak transcription	HepG2	liver
3	chr11:9349000-9352200	Weak transcription	Hela-S3	cervix
4	chr11:9349200-9352400	Weak transcription	Placenta	Placenta
5	chr11:9349800-9356600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:9350400-9351000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:9350400-9351000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:9350400-9351000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:9350400-9351000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:9350400-9352200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:9350400-9352200	Enhancers	NHDF-Ad	bronchial
12	chr11:9350400-9353400	Enhancers	HSMM	muscle
13	chr11:9350400-9353400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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