Variant report

Variant	rs61876296
Chromosome Location	chr11:9060474-9060475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9060449..9064388-chr11:9064769..9066551,3	MCF-7	breast:
2	chr11:9057967..9060899-chr11:9063796..9066670,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKIP1-7	chr11:9060362-9060963	NONHSAT017903

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57590336	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58032533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58819569	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61876297	1.00[EUR][1000 genomes]
rs61876299	0.97[EUR][1000 genomes]
rs61876300	0.97[EUR][1000 genomes]
rs61876301	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv467704	chr11:9059192-9125301	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv553454	chr11:9059192-9125301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:9047200-9068600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:9052400-9067800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:9052800-9060600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:9052800-9069800	Weak transcription	Gastric	stomach
6	chr11:9053000-9060600	Weak transcription	Fetal Stomach	stomach
7	chr11:9055600-9060800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:9056000-9060800	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:9058400-9099800	Weak transcription	Aorta	Aorta
10	chr11:9058600-9060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:9058800-9063000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:9059000-9060600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:9059000-9060800	Enhancers	Placenta	Placenta
14	chr11:9059000-9061000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:9059000-9061800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:9059200-9063400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:9059200-9074000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:9059400-9060600	Weak transcription	Brain Anterior Caudate	brain
19	chr11:9059400-9063800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:9059600-9062200	Strong transcription	Pancreas	Pancrea
21	chr11:9059600-9068000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:9060000-9060600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:9060000-9068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:9060200-9061400	Strong transcription	Stomach Smooth Muscle	stomach
25	chr11:9060400-9060600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:9060400-9061000	Enhancers	Lung	lung
27	chr11:9060400-9061200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:9060400-9061400	Enhancers	Hela-S3	cervix
29	chr11:9060400-9063400	Weak transcription	Fetal Lung	lung
30	chr11:9060400-9066400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links