Variant report

Variant	rs61876865
Chromosome Location	chr11:9741049-9741050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56235379	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878123	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9710200-9758400	Weak transcription	Psoas Muscle	Psoas
2	chr11:9711400-9754400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:9717600-9751000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:9717600-9751000	Weak transcription	Ovary	ovary
5	chr11:9718200-9749600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9725200-9749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:9725400-9741800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:9725600-9748000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:9726600-9749600	Weak transcription	Liver	Liver
10	chr11:9729600-9755400	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr11:9730600-9747200	Weak transcription	Pancreas	Pancrea
12	chr11:9730600-9758200	Weak transcription	Esophagus	oesophagus
13	chr11:9732000-9754000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:9733200-9743800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:9733200-9754000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:9733400-9749400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:9733400-9754200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:9733600-9741600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:9733600-9757000	Weak transcription	Fetal Brain Female	brain
20	chr11:9733600-9761600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:9733800-9743800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:9733800-9759800	Weak transcription	Fetal Heart	heart
23	chr11:9736400-9741200	Weak transcription	Primary T cells from cord blood	blood
24	chr11:9737600-9741600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:9737600-9742200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:9737600-9742600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:9737600-9748000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:9737600-9749400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:9737600-9750400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:9737600-9753800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:9737600-9754200	Weak transcription	Gastric	stomach
32	chr11:9738000-9742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:9738000-9742400	Enhancers	Fetal Muscle Leg	muscle
34	chr11:9738000-9743800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:9738000-9744400	Enhancers	Primary hematopoietic stem cells	blood
36	chr11:9738000-9747200	Weak transcription	Fetal Stomach	stomach
37	chr11:9738000-9749600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:9738000-9750400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:9738400-9741200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:9738400-9744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:9738400-9744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:9738600-9741800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:9738600-9741800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:9738600-9744000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:9738600-9752400	Weak transcription	Thymus	Thymus
46	chr11:9738800-9741200	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:9738800-9741800	Weak transcription	HSMM	muscle
48	chr11:9738800-9748000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:9738800-9748000	Weak transcription	NHEK	skin
50	chr11:9738800-9748200	Weak transcription	HSMMtube	muscle

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