Variant report

Variant	rs61877880
Chromosome Location	chr10:93227620-93227621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93227586-93227864	MCF-7	breast:	n/a	n/a
2	POLR2A	chr10:93227261-93227854	MCF-7	breast:	n/a	n/a
3	POLR2A	chr10:93227172-93227871	A549	lung:	n/a	n/a
4	MAX	chr10:93227474-93227986	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr10:93226862-93227882	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93222597..93225004-chr10:93227464..93229499,2	K562	blood:
2	chr10:93225738..93228556-chr10:93240715..93243653,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271385	TF binding region
ENSG00000271385	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12775728	0.85[AMR][1000 genomes]
rs34718593	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35403049	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35770526	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55908462	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv948134	chr10:93224011-93239053	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
2	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
5	chr10:93220600-93271400	Weak transcription	HMEC	breast
6	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
9	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
10	chr10:93222200-93228000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:93222400-93228200	Strong transcription	Fetal Brain Male	brain
12	chr10:93222400-93230400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:93222600-93228000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:93222600-93254400	Weak transcription	NHDF-Ad	bronchial
15	chr10:93222800-93244600	Weak transcription	Osteobl	bone
16	chr10:93223200-93230400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93223400-93228400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:93223600-93228400	Weak transcription	Stomach Mucosa	stomach
19	chr10:93224200-93228200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:93224200-93271200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:93224400-93228600	Weak transcription	Liver	Liver
23	chr10:93224600-93228600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:93224800-93228000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr10:93225200-93231400	Weak transcription	Fetal Kidney	kidney
26	chr10:93225200-93247800	Weak transcription	Psoas Muscle	Psoas
27	chr10:93225400-93242200	Weak transcription	HSMM	muscle
28	chr10:93225600-93228000	ZNF genes & repeats	Brain Germinal Matrix	brain
29	chr10:93225800-93228000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:93225800-93228200	Weak transcription	Colonic Mucosa	Colon
31	chr10:93226000-93228200	Weak transcription	Brain Substantia Nigra	brain
32	chr10:93226200-93227800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:93226200-93227800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr10:93226400-93227800	Strong transcription	Brain Hippocampus Middle	brain
35	chr10:93226400-93228000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:93226400-93228000	Strong transcription	Brain Cingulate Gyrus	brain
37	chr10:93226400-93228000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr10:93226400-93228200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:93226400-93228400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:93226600-93227800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr10:93226600-93227800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:93226600-93227800	Strong transcription	Adipose Nuclei	Adipose
43	chr10:93226600-93227800	Strong transcription	Brain Anterior Caudate	brain
44	chr10:93226600-93227800	Strong transcription	Fetal Intestine Large	intestine
45	chr10:93226600-93227800	Strong transcription	Left Ventricle	heart
46	chr10:93226600-93228000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:93226600-93228000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:93226600-93228000	Strong transcription	Brain Angular Gyrus	brain
49	chr10:93226600-93228000	ZNF genes & repeats	Esophagus	oesophagus
50	chr10:93226600-93228000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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