Variant report

Variant	rs61877903
Chromosome Location	chr11:9251596-9251597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61877793	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61877906	0.83[AMR][1000 genomes]
rs61877912	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9226000-9252000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:9226000-9252800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:9230400-9253400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9231000-9252200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:9236000-9252200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:9237000-9252200	Weak transcription	NHLF	lung
7	chr11:9237000-9252400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:9237000-9254000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:9237200-9251600	Weak transcription	Primary B cells from cord blood	blood
10	chr11:9237400-9252000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:9240200-9252200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:9241400-9254200	Weak transcription	HMEC	breast
13	chr11:9241800-9252800	Weak transcription	HSMM	muscle
14	chr11:9244600-9252600	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:9244600-9252600	Weak transcription	Fetal Brain Female	brain
16	chr11:9245400-9252800	Weak transcription	Thymus	Thymus
17	chr11:9247000-9252400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:9247000-9252600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:9247400-9252400	Enhancers	Brain Hippocampus Middle	brain
20	chr11:9247600-9252200	Weak transcription	Lung	lung
21	chr11:9247600-9252200	Weak transcription	Spleen	Spleen
22	chr11:9248600-9251800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr11:9248600-9251800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:9248600-9252000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:9249000-9252400	Enhancers	Brain Angular Gyrus	brain
26	chr11:9249000-9252400	Weak transcription	GM12878-XiMat	blood
27	chr11:9249000-9252800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:9249400-9252800	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:9249600-9252200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:9249600-9252400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:9249600-9252600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:9249600-9252600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:9249600-9252600	Enhancers	Brain Anterior Caudate	brain
34	chr11:9249800-9251600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:9249800-9251600	Enhancers	Fetal Muscle Leg	muscle
36	chr11:9249800-9252000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr11:9249800-9252000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr11:9249800-9252200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:9249800-9252200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:9249800-9252400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr11:9249800-9252400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:9249800-9252400	Enhancers	Brain Substantia Nigra	brain
43	chr11:9249800-9252600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:9249800-9252600	Enhancers	Fetal Heart	heart
45	chr11:9249800-9252800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:9249800-9252800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr11:9249800-9252800	Enhancers	Right Atrium	heart
48	chr11:9249800-9253000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:9249800-9253200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:9250200-9253000	Enhancers	Brain Germinal Matrix	brain

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