Variant report

Variant	rs61886082
Chromosome Location	chr11:64612939-64612940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr11:64612694-64612951	K562	blood:	n/a	n/a
2	POLR2A	chr11:64610422-64613121	K562	blood:	n/a	n/a
3	RCOR1	chr11:64612362-64612983	K562	blood:	n/a	n/a
4	SIN3AK20	chr11:64609403-64613084	MCF-7	breast:	n/a	n/a
5	CEBPB	chr11:64612916-64613269	Hela-S3	cervix:	n/a	chr11:64613105-64613116
6	EGR1	chr11:64611575-64612949	K562	blood:	n/a	chr11:64612331-64612345 chr11:64612625-64612638 chr11:64611848-64611862 chr11:64612626-64612635 chr11:64611849-64611862 chr11:64612339-64612349 chr11:64612333-64612342 chr11:64612326-64612348 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612625-64612638 chr11:64612331-64612342 chr11:64612620-64612630 chr11:64612330-64612343 chr11:64612329-64612344 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612558-64612582 chr11:64612625-64612638 chr11:64611849-64611859 chr11:64612332-64612342 chr11:64611850-64611859 chr11:64612283-64612297 chr11:64612330-64612344 chr11:64612624-64612639 chr11:64612623-64612633 chr11:64611849-64611862 chr11:64612299-64612313 chr11:64612332-64612342 chr11:64612330-64612343 chr11:64612324-64612333 chr11:64611850-64611860 chr11:64612625-64612638 chr11:64612625-64612635 chr11:64612624-64612638 chr11:64611846-64611860 chr11:64612333-64612343
7	POLR2A	chr11:64611205-64613089	K562	blood:	n/a	n/a
8	CBX3	chr11:64612556-64612992	K562	blood:	n/a	n/a
9	MAZ	chr11:64611539-64613057	IMR90	lung:	n/a	n/a
10	RCOR1	chr11:64611833-64613061	K562	blood:	n/a	n/a
11	TCF7L2	chr11:64612773-64613164	PANC-1	pancreas:	n/a	chr11:64613013-64613022 chr11:64613010-64613024 chr11:64613012-64613021 chr11:64613009-64613025 chr11:64613011-64613021 chr11:64613009-64613025
12	ZBTB7A	chr11:64612894-64613187	K562	blood:	n/a	n/a
13	TCF7L2	chr11:64612668-64613254	Hela-S3	cervix:	n/a	chr11:64613013-64613022 chr11:64613010-64613024 chr11:64613012-64613021 chr11:64613009-64613025 chr11:64613011-64613021 chr11:64613009-64613025
14	CEBPB	chr11:64612890-64613305	K562	blood:	n/a	chr11:64613105-64613116
15	ZNF384	chr11:64612501-64613269	K562	blood:	n/a	n/a
16	JUN	chr11:64610378-64613378	K562	blood:	n/a	chr11:64610673-64610685 chr11:64611168-64611178 chr11:64612256-64612265 chr11:64611169-64611177 chr11:64611168-64611178 chr11:64610675-64610684 chr11:64611169-64611177 chr11:64611865-64611874 chr11:64611169-64611176 chr11:64612621-64612630
17	BHLHE40	chr11:64612697-64612960	K562	blood:	n/a	n/a
18	ELF1	chr11:64612053-64612989	MCF-7	breast:	n/a	chr11:64612320-64612333 chr11:64612623-64612635 chr11:64612333-64612345
19	TCF12	chr11:64612246-64613038	ECC-1	luminal epithelium:	n/a	n/a
20	GABPA	chr11:64612030-64612969	MCF-7	breast:	n/a	chr11:64612339-64612348 chr11:64612624-64612633
21	NR2F2	chr11:64612617-64613256	K562	blood:	n/a	n/a
22	RCOR1	chr11:64612512-64613325	IMR90	lung:	n/a	n/a
23	EGR1	chr11:64611138-64612945	MCF-7	breast:	n/a	chr11:64612331-64612345 chr11:64612625-64612638 chr11:64611848-64611862 chr11:64612626-64612635 chr11:64611849-64611862 chr11:64612339-64612349 chr11:64612333-64612342 chr11:64612326-64612348 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612625-64612638 chr11:64612331-64612342 chr11:64612620-64612630 chr11:64612330-64612343 chr11:64612329-64612344 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612558-64612582 chr11:64612625-64612638 chr11:64611849-64611859 chr11:64612332-64612342 chr11:64611850-64611859 chr11:64612283-64612297 chr11:64612330-64612344 chr11:64612624-64612639 chr11:64612623-64612633 chr11:64611849-64611862 chr11:64612299-64612313 chr11:64612332-64612342 chr11:64612330-64612343 chr11:64612324-64612333 chr11:64611850-64611860 chr11:64612625-64612638 chr11:64612625-64612635 chr11:64612624-64612638 chr11:64611846-64611860 chr11:64612333-64612343
24	ZEB1	chr11:64611211-64613047	HepG2	liver:	n/a	chr11:64612242-64612251
25	TCF7L2	chr11:64612555-64613200	HCT-116	colon:	n/a	chr11:64613013-64613022 chr11:64613010-64613024 chr11:64613012-64613021 chr11:64613009-64613025 chr11:64613011-64613021 chr11:64613009-64613025
26	ELF1	chr11:64612061-64613008	MCF-7	breast:	n/a	chr11:64612320-64612333 chr11:64612623-64612635 chr11:64612333-64612345
27	ARID3A	chr11:64612570-64613035	K562	blood:	n/a	n/a
28	MXI1	chr11:64612550-64613042	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chr11:64612499-64613165	K562	blood:	n/a	n/a
30	EGR1	chr11:64609532-64613051	HCT-116	colon:	n/a	chr11:64612331-64612345 chr11:64612625-64612638 chr11:64611848-64611862 chr11:64612626-64612635 chr11:64611849-64611862 chr11:64609645-64609669 chr11:64612339-64612349 chr11:64610407-64610420 chr11:64612333-64612342 chr11:64612326-64612348 chr11:64610410-64610420 chr11:64610407-64610421 chr11:64610407-64610420 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612625-64612638 chr11:64612331-64612342 chr11:64612620-64612630 chr11:64610409-64610419 chr11:64612330-64612343 chr11:64612329-64612344 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612558-64612582 chr11:64610410-64610419 chr11:64610407-64610420 chr11:64612625-64612638 chr11:64611849-64611859 chr11:64612332-64612342 chr11:64611850-64611859 chr11:64612283-64612297 chr11:64612330-64612344 chr11:64612624-64612639 chr11:64610799-64610810 chr11:64612623-64612633 chr11:64611849-64611862 chr11:64612299-64612313 chr11:64612332-64612342 chr11:64612330-64612343 chr11:64612324-64612333 chr11:64611850-64611860 chr11:64612625-64612638 chr11:64609549-64609558 chr11:64612625-64612635 chr11:64612624-64612638 chr11:64611846-64611860 chr11:64612333-64612343
31	TCF12	chr11:64611508-64613018	ECC-1	luminal epithelium:	n/a	n/a
32	NR2F2	chr11:64612335-64613304	K562	blood:	n/a	n/a
33	CEBPB	chr11:64612937-64613231	IMR90	lung:	n/a	chr11:64613105-64613116
34	MAFK	chr11:64612867-64613076	K562	blood:	n/a	n/a
35	ZBTB7A	chr11:64610228-64612987	ECC-1	luminal epithelium:	n/a	chr11:64611432-64611441 chr11:64610718-64610726 chr11:64612492-64612501
36	TEAD4	chr11:64612114-64612978	K562	blood:	n/a	n/a
37	CBX3	chr11:64612437-64613312	K562	blood:	n/a	n/a
38	EGR1	chr11:64609975-64612976	HCT-116	colon:	n/a	chr11:64612331-64612345 chr11:64612625-64612638 chr11:64611848-64611862 chr11:64612626-64612635 chr11:64611849-64611862 chr11:64612339-64612349 chr11:64610407-64610420 chr11:64612333-64612342 chr11:64612326-64612348 chr11:64610410-64610420 chr11:64610407-64610421 chr11:64610407-64610420 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612625-64612638 chr11:64612331-64612342 chr11:64612620-64612630 chr11:64610409-64610419 chr11:64612330-64612343 chr11:64612329-64612344 chr11:64612330-64612343 chr11:64611849-64611862 chr11:64612558-64612582 chr11:64610410-64610419 chr11:64610407-64610420 chr11:64612625-64612638 chr11:64611849-64611859 chr11:64612332-64612342 chr11:64611850-64611859 chr11:64612283-64612297 chr11:64612330-64612344 chr11:64612624-64612639 chr11:64610799-64610810 chr11:64612623-64612633 chr11:64611849-64611862 chr11:64612299-64612313 chr11:64612332-64612342 chr11:64612330-64612343 chr11:64612324-64612333 chr11:64611850-64611860 chr11:64612625-64612638 chr11:64612625-64612635 chr11:64612624-64612638 chr11:64611846-64611860 chr11:64612333-64612343
39	POLR2A	chr11:64612631-64613001	HCT-116	colon:	n/a	n/a
40	JUND	chr11:64611888-64613144	K562	blood:	n/a	chr11:64612256-64612265 chr11:64612621-64612630

No.	Distal block	Cell Line	Cell type
1	chr11:64544026..64547354-chr11:64610476..64614597,11	MCF-7	breast:
2	chr11:64611788..64615884-chr11:64889092..64892306,4	K562	blood:
3	chr11:64601267..64604477-chr11:64610068..64613369,3	K562	blood:
4	chr11:64606648..64614730-chr11:64876453..64886748,20	MCF-7	breast:
5	chr11:64543744..64547403-chr11:64610118..64615032,5	K562	blood:
6	chr11:64574843..64581404-chr11:64607394..64613763,11	MCF-7	breast:
7	chr11:64610673..64614254-chr11:64900941..64904149,4	MCF-7	breast:
8	chr11:64543433..64548261-chr11:64608025..64614805,12	MCF-7	breast:
9	chr11:64568489..64574764-chr11:64609155..64613913,19	MCF-7	breast:
10	chr11:64611277..64614890-chr11:65264545..65267684,3	K562	blood:
11	chr11:64612059..64614738-chr11:64932959..64934868,2	K562	blood:
12	chr11:64607104..64613028-chr11:64878466..64882720,9	MCF-7	breast:
13	chr11:64571014..64575800-chr11:64609684..64614421,7	K562	blood:
14	chr11:64569062..64575536-chr11:64608720..64614805,15	MCF-7	breast:
15	chr11:64568677..64572675-chr11:64611050..64613930,4	K562	blood:
16	chr11:64575754..64580490-chr11:64608432..64614008,12	MCF-7	breast:
17	chr11:64611858..64613691-chr11:64937445..64939310,2	K562	blood:
18	chr11:64609572..64613469-chr11:64883335..64886835,8	MCF-7	breast:
19	chr11:64612131..64614344-chr11:64949273..64950792,2	K562	blood:
20	chr11:64612078..64613725-chr11:64876395..64879277,2	K562	blood:
21	chr11:64610442..64614915-chr11:64882306..64888577,8	K562	blood:
22	chr11:64611161..64616461-chr11:64883590..64887057,5	K562	blood:
23	chr11:64612077..64613649-chr11:64793534..64795041,2	K562	blood:
24	chr11:64607780..64614825-chr11:64861884..64865172,9	MCF-7	breast:

Variant related genes	Relation type
CDC42BPG	TF binding region
ENSG00000162298	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000133895	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
6	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
7	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
8	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
9	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
10	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
11	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
12	nsv555207	chr11:64600002-64620518	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
14	nsv897708	chr11:64602757-64695271	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
15	nsv870106	chr11:64610698-64640067	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	38 gene(s)	inside rSNPs	diseases
16	esv3416227	chr11:64611426-64613274	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64611000-64613000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr11:64611200-64613000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:64611600-64613000	Enhancers	NHLF	lung
4	chr11:64611800-64613000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:64611800-64614800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:64611800-64614800	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:64611800-64618400	Weak transcription	HSMM	muscle
8	chr11:64611800-64619200	Weak transcription	HSMMtube	muscle
9	chr11:64611800-64620800	Weak transcription	HUVEC	blood vessel
10	chr11:64611800-64621200	Weak transcription	Fetal Heart	heart
11	chr11:64612200-64613000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:64612200-64614800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:64612400-64613000	Enhancers	Spleen	Spleen
14	chr11:64612400-64613000	Flanking Active TSS	Hela-S3	cervix
15	chr11:64612400-64613200	Enhancers	Stomach Mucosa	stomach
16	chr11:64612400-64619400	Weak transcription	Aorta	Aorta
17	chr11:64612600-64613000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:64612600-64613000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:64612600-64613000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:64612600-64613000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr11:64612600-64613000	Enhancers	Primary B cells from cord blood	blood
22	chr11:64612600-64613000	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr11:64612600-64613000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:64612600-64613000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:64612600-64613000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:64612600-64613000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr11:64612600-64613000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr11:64612600-64613000	Enhancers	Adipose Nuclei	Adipose
29	chr11:64612600-64613000	Enhancers	Fetal Muscle Trunk	muscle
30	chr11:64612600-64613000	Enhancers	Fetal Muscle Leg	muscle
31	chr11:64612600-64613000	Flanking Active TSS	Pancreas	Pancrea
32	chr11:64612600-64613000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr11:64612600-64613000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr11:64612600-64613000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr11:64612600-64613000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
36	chr11:64612600-64613000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr11:64612600-64613000	Enhancers	A549	lung
38	chr11:64612600-64613000	Enhancers	GM12878-XiMat	blood
39	chr11:64612600-64613000	Flanking Active TSS	HepG2	liver
40	chr11:64612600-64613000	Flanking Active TSS	K562	blood
41	chr11:64612600-64613000	Flanking Active TSS	NHEK	skin
42	chr11:64612600-64613400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:64612600-64614200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:64612600-64614400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:64612600-64614800	Weak transcription	Gastric	stomach
46	chr11:64612600-64614800	Weak transcription	Psoas Muscle	Psoas
47	chr11:64612600-64614800	Weak transcription	Right Atrium	heart
48	chr11:64612600-64617200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:64612600-64618600	Weak transcription	NH-A	brain
50	chr11:64612600-64619000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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