Variant report

Variant	rs61886990
Chromosome Location	chr11:57258079-57258080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57253056..57260530-chr11:57277596..57285007,11	K562	blood:
2	chr11:57247726..57251510-chr11:57253790..57259247,6	K562	blood:
3	chr11:57254555..57260449-chr11:57262001..57269915,7	K562	blood:

Variant related genes	Relation type
ENSG00000149150	Chromatin interaction
ENSG00000251995	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11229042	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229044	0.82[EUR][1000 genomes]
rs4939146	0.82[EUR][1000 genomes]
rs4939147	0.82[EUR][1000 genomes]
rs58752761	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61886982	0.94[EUR][1000 genomes]
rs6591429	0.82[EUR][1000 genomes]
rs72925922	0.90[EUR][1000 genomes]
rs7933797	0.82[EUR][1000 genomes]
rs7934626	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57250600-57259600	Strong transcription	Pancreas	Pancrea
2	chr11:57250800-57259600	Strong transcription	HepG2	liver
3	chr11:57250800-57266000	Weak transcription	Right Atrium	heart
4	chr11:57251000-57260600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:57251000-57261400	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:57251000-57266800	Weak transcription	HUVEC	blood vessel
7	chr11:57251000-57267400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:57251200-57259600	Strong transcription	Liver	Liver
9	chr11:57251200-57260800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:57251200-57260800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:57251200-57261000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:57251200-57261000	Weak transcription	Dnd41	blood
13	chr11:57251200-57263800	Strong transcription	Ovary	ovary
14	chr11:57251200-57266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:57251200-57266800	Weak transcription	HSMM	muscle
16	chr11:57251200-57280600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:57251400-57258200	Weak transcription	NHDF-Ad	bronchial
18	chr11:57251400-57261200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:57251400-57266000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:57251400-57266200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:57251400-57266400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:57251400-57266800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:57251400-57279200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:57251400-57281200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:57251600-57258800	Strong transcription	Adipose Nuclei	Adipose
26	chr11:57251600-57259600	Strong transcription	Fetal Intestine Small	intestine
27	chr11:57251600-57259800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr11:57251600-57260800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:57251600-57266800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:57251800-57266200	Strong transcription	Fetal Stomach	stomach
31	chr11:57252000-57259200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:57252000-57259200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:57252000-57259200	Strong transcription	Aorta	Aorta
34	chr11:57252000-57259400	Strong transcription	Gastric	stomach
35	chr11:57252000-57260800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:57252200-57259400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:57252200-57259400	Strong transcription	Colon Smooth Muscle	Colon
38	chr11:57252200-57259400	Strong transcription	Right Ventricle	heart
39	chr11:57252200-57261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:57252200-57261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:57252400-57258400	Weak transcription	Fetal Brain Male	brain
42	chr11:57252400-57258800	Strong transcription	Fetal Intestine Large	intestine
43	chr11:57252400-57264000	Weak transcription	Stomach Mucosa	stomach
44	chr11:57252600-57258800	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:57252600-57259000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:57252600-57267600	Weak transcription	Small Intestine	intestine
47	chr11:57252800-57266800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:57253200-57259600	Strong transcription	Spleen	Spleen
49	chr11:57253200-57266800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:57253200-57266800	Weak transcription	Thymus	Thymus

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