Variant report

Variant	rs61890360
Chromosome Location	chr11:66182235-66182236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66176168..66179567-chr11:66180663..66184419,5	K562	blood:
2	chr11:66178617..66182846-chr11:66233646..66237657,3	MCF-7	breast:
3	chr11:66181218..66183138-chr11:66186069..66188598,2	MCF-7	breast:
4	chr11:66180111..66182922-chr11:66204763..66206576,2	K562	blood:
5	chr11:66180100..66183282-chr11:66184257..66186703,5	K562	blood:

Variant related genes	Relation type
ENSG00000174576	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000254510	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12807979	1.00[ASN][1000 genomes]
rs56223609	1.00[ASN][1000 genomes]
rs61890364	1.00[ASN][1000 genomes]
rs61890399	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66177000-66183600	Weak transcription	Right Atrium	heart
2	chr11:66177400-66185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:66177600-66184600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:66178000-66183000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:66179200-66185200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:66179400-66185000	Weak transcription	Aorta	Aorta
7	chr11:66179400-66185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:66180000-66182400	Enhancers	Colon Smooth Muscle	Colon
9	chr11:66180000-66183600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:66180000-66185400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:66180200-66183800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:66180400-66182800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:66180400-66185200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:66180600-66183400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:66181000-66183000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:66181000-66183000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:66181200-66182600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:66181200-66182800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr11:66181400-66182400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:66182000-66183000	Weak transcription	Fetal Heart	heart
21	chr11:66182000-66183600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:66182000-66183800	Genic enhancers	Stomach Smooth Muscle	stomach
23	chr11:66182000-66185400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:66182000-66185400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:66182000-66185400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:66182000-66185400	Weak transcription	Brain Angular Gyrus	brain
27	chr11:66182000-66186000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:66182200-66182400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:66182200-66182600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:66182200-66182800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr11:66182200-66183000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr11:66182200-66183000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr11:66182200-66183200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:66182200-66184800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:66182200-66185200	Weak transcription	Fetal Stomach	stomach

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