Variant report

Variant	rs61890781
Chromosome Location	chr11:100665687-100665688
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17573475	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754702	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs507695	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58626072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890787	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs682847	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:100654400-100671200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:100656600-100679600	Weak transcription	Fetal Lung	lung
5	chr11:100656800-100668800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:100657000-100675600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:100660400-100669400	Weak transcription	Placenta	Placenta
8	chr11:100660400-100679400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:100660400-100679600	Weak transcription	Stomach Mucosa	stomach
10	chr11:100660400-100683600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:100660600-100667000	Weak transcription	NH-A	brain
12	chr11:100660600-100668400	Weak transcription	HSMMtube	muscle
13	chr11:100660600-100671000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:100660600-100675600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:100660600-100679600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:100660600-100679600	Weak transcription	HSMM	muscle
17	chr11:100660600-100680000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:100660600-100680400	Weak transcription	Left Ventricle	heart
19	chr11:100661000-100671800	Weak transcription	Liver	Liver
20	chr11:100662000-100669400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:100662600-100679600	Weak transcription	Fetal Heart	heart
22	chr11:100663000-100668000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:100663000-100691800	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:100663200-100667800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:100663200-100679600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:100663200-100679600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:100663400-100666200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:100663400-100669000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:100663400-100679800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:100663600-100666400	Weak transcription	Primary B cells from cord blood	blood
31	chr11:100664000-100667000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:100664200-100666000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:100664600-100669400	Weak transcription	HUVEC	blood vessel
34	chr11:100665000-100666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:100665400-100666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:100665400-100672600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:100665600-100669000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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