Variant report

Variant	rs61890858
Chromosome Location	chr11:5630188-5630189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:5628897..5631737-chr11:5750557..5752492,2	K562	blood:
2	11:5628727-5635517..11:5721056-5732713	GM12878	blood:
3	11:5628727-5635517..11:5714465-5718134	GM12878	blood:

Variant related genes	Relation type
ENSG00000132274	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10500653	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11602842	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12278274	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17304278	0.90[ASN][1000 genomes]
rs4910827	0.95[EUR][1000 genomes]
rs4910828	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
2	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1048455	chr11:5609783-5655393	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv896946	chr11:5619008-5639873	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5618400-5640400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:5618400-5642200	Weak transcription	Left Ventricle	heart
3	chr11:5618600-5640200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:5618600-5645200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:5619000-5631400	Weak transcription	Fetal Intestine Large	intestine
6	chr11:5619000-5631800	Weak transcription	GM12878-XiMat	blood
7	chr11:5619600-5631800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:5619600-5636000	Weak transcription	Aorta	Aorta
9	chr11:5619600-5641600	Weak transcription	Lung	lung
10	chr11:5619600-5642000	Weak transcription	Ovary	ovary
11	chr11:5619600-5645600	Weak transcription	Esophagus	oesophagus
12	chr11:5620200-5631400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:5621600-5634000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:5622000-5633400	Weak transcription	Fetal Kidney	kidney
15	chr11:5622200-5641800	Weak transcription	K562	blood
16	chr11:5624400-5631600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:5624400-5633800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:5624600-5632400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:5624600-5632600	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr11:5624600-5634000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:5624600-5634000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:5624800-5641800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:5625200-5632200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:5625600-5632200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:5625800-5630400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:5626000-5632400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:5626600-5631600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:5626800-5640400	Weak transcription	Placenta	Placenta
29	chr11:5627400-5630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:5627400-5631800	Weak transcription	Adipose Nuclei	Adipose
31	chr11:5627400-5641000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:5627600-5631400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:5627600-5631800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:5627600-5634800	Strong transcription	A549	lung
35	chr11:5627600-5640200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:5627600-5642000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:5627600-5645400	Weak transcription	Fetal Stomach	stomach
38	chr11:5627800-5639600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:5627800-5640000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:5627800-5640000	Weak transcription	NHLF	lung
41	chr11:5627800-5640400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:5628000-5639800	Weak transcription	NH-A	brain
43	chr11:5628000-5640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:5628000-5642000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:5628000-5642000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:5629200-5632200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:5629400-5630800	Enhancers	Osteobl	bone
48	chr11:5629600-5630800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:5629800-5630200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:5629800-5631200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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