Variant report

Variant	rs61891264
Chromosome Location	chr11:66731640-66731641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66731055..66733734-chr11:66736895..66738964,2	MCF-7	breast:
2	chr11:66634984..66637199-chr11:66730841..66732488,2	K562	blood:
3	chr11:66724721..66727523-chr11:66731279..66734152,3	MCF-7	breast:
4	chr11:66724675..66726340-chr11:66729416..66731971,2	K562	blood:

Variant related genes	Relation type
ENSG00000173599	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2380757	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
5	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66726600-66732400	Weak transcription	Small Intestine	intestine
2	chr11:66726600-66735000	Weak transcription	HSMM	muscle
3	chr11:66726800-66732200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:66726800-66732200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:66726800-66732400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:66726800-66732400	Weak transcription	NHLF	lung
7	chr11:66726800-66734800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:66726800-66737200	Weak transcription	HSMMtube	muscle
9	chr11:66726800-66737600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:66727000-66732200	Weak transcription	NHDF-Ad	bronchial
11	chr11:66727000-66732400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:66727000-66732400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:66727000-66732400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:66727200-66732000	Weak transcription	K562	blood
15	chr11:66727200-66732200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:66727200-66732200	Weak transcription	Adipose Nuclei	Adipose
17	chr11:66727200-66732200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:66727200-66732200	Weak transcription	HepG2	liver
19	chr11:66727200-66732400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:66727200-66732400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:66727200-66732600	Weak transcription	Liver	Liver
22	chr11:66727200-66733600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:66727200-66734600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:66727200-66734800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:66727200-66734800	Weak transcription	HMEC	breast
26	chr11:66727200-66735000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:66727200-66738000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:66729600-66735200	Enhancers	Hela-S3	cervix
29	chr11:66730800-66732200	Weak transcription	A549	lung
30	chr11:66730800-66733400	Weak transcription	NHEK	skin
31	chr11:66731400-66733800	Weak transcription	Rectal Mucosa Donor 31	rectum

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