Variant report

Variant	rs61891375
Chromosome Location	chr11:10485433-10485434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10770118	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10770120	0.91[EUR][1000 genomes]
rs28403593	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55634501	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55638917	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55931228	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57517348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59344411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59602345	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60628971	0.83[AMR][1000 genomes]
rs61891367	0.83[AMR][1000 genomes]
rs61891379	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61891381	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61891382	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72856184	0.85[AMR][1000 genomes]
rs72857462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs922360	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10477800-10489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10478000-10487400	Weak transcription	HMEC	breast
4	chr11:10478200-10485800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:10478400-10486000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:10478400-10487200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:10478400-10487400	Weak transcription	Right Ventricle	heart
8	chr11:10478400-10489000	Weak transcription	A549	lung
9	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
11	chr11:10478800-10493600	Weak transcription	HSMM	muscle
12	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
13	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:10480600-10485800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:10480800-10485600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:10481000-10486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:10481000-10488000	Weak transcription	Fetal Stomach	stomach
19	chr11:10481200-10485800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:10481200-10486400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:10481200-10487600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:10481200-10494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:10481400-10486400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:10481400-10487200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:10481400-10488400	Weak transcription	NHDF-Ad	bronchial
26	chr11:10482400-10489000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:10482600-10486600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:10482600-10486800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:10482600-10488000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:10482600-10488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:10482600-10488600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:10482600-10489000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:10482600-10489200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:10482800-10485600	Strong transcription	Spleen	Spleen
35	chr11:10482800-10485800	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr11:10482800-10487200	Strong transcription	Dnd41	blood
37	chr11:10482800-10487600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:10482800-10488000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:10482800-10488600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:10482800-10488600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:10482800-10488600	Strong transcription	Thymus	Thymus
42	chr11:10482800-10488800	Strong transcription	Primary T cells from cord blood	blood
43	chr11:10482800-10488800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:10483000-10486200	Strong transcription	NHEK	skin
45	chr11:10483000-10486400	Strong transcription	Brain Anterior Caudate	brain
46	chr11:10483000-10487200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr11:10483000-10487200	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:10483000-10487200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:10483000-10487400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:10483000-10487400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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