Variant report

Variant	rs61891566
Chromosome Location	chr11:67062680-67062681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:67054455..67063331-chr11:67064649..67075279,24	K562	blood:

Variant related genes	Relation type
ENSG00000172932	Chromatin interaction
ENSG00000172830	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11227764	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11227771	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11227780	0.86[EUR][1000 genomes]
rs11826923	0.86[EUR][1000 genomes]
rs2004225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3802745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57238619	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58530946	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60229295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61891569	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61891571	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61891572	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61891574	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72932705	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897798	chr11:67024534-67065858	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv897799	chr11:67024534-67072623	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
9	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
10	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
11	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
12	nsv897802	chr11:67051245-67075024	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
14	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67057600-67063200	Weak transcription	Fetal Kidney	kidney
2	chr11:67057600-67067000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:67057600-67069200	Weak transcription	Psoas Muscle	Psoas
4	chr11:67057800-67063000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:67058000-67065800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:67058400-67063000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:67058600-67066600	Weak transcription	HSMMtube	muscle
8	chr11:67058600-67069200	Weak transcription	Fetal Heart	heart
9	chr11:67059200-67062800	Strong transcription	Fetal Intestine Small	intestine
10	chr11:67059200-67063200	Weak transcription	Fetal Brain Male	brain
11	chr11:67059800-67062800	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:67059800-67062800	Strong transcription	Fetal Muscle Leg	muscle
13	chr11:67059800-67062800	Weak transcription	Left Ventricle	heart
14	chr11:67059800-67063000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:67059800-67063200	Weak transcription	Liver	Liver
16	chr11:67059800-67064400	Strong transcription	Placenta	Placenta
17	chr11:67059800-67066200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:67059800-67066200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:67059800-67066200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:67059800-67066400	Weak transcription	Gastric	stomach
21	chr11:67059800-67066800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:67059800-67067800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:67060000-67062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:67060000-67062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:67060000-67063200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:67060000-67063400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:67060000-67063600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:67060000-67065800	Weak transcription	Esophagus	oesophagus
29	chr11:67060000-67065800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:67060000-67065800	Weak transcription	Spleen	Spleen
31	chr11:67060000-67066200	Weak transcription	Colonic Mucosa	Colon
32	chr11:67060000-67066200	Weak transcription	Right Ventricle	heart
33	chr11:67060000-67066400	Weak transcription	Lung	lung
34	chr11:67060000-67066400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:67060000-67066600	Weak transcription	Aorta	Aorta
36	chr11:67060000-67066800	Weak transcription	Pancreas	Pancrea
37	chr11:67060000-67067000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:67060000-67068000	Strong transcription	Fetal Muscle Trunk	muscle
39	chr11:67060000-67069400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:67060000-67069600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:67060200-67063000	Weak transcription	Fetal Brain Female	brain
42	chr11:67060200-67066200	Weak transcription	Brain Angular Gyrus	brain
43	chr11:67060200-67066400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:67060400-67063200	Weak transcription	Brain Substantia Nigra	brain
45	chr11:67060400-67065600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:67060400-67065800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:67060600-67062800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:67060600-67064000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:67060800-67062800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:67060800-67062800	Strong transcription	Fetal Stomach	stomach

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