Variant report

Variant	rs61893396
Chromosome Location	chr11:105115591-105115592
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10895791	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10895792	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10895793	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10895794	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11226658	0.84[AMR][1000 genomes]
rs11226659	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11603289	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606089	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11606435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449045	0.94[ASN][1000 genomes]
rs1449049	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1584447	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34779210	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56249079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61893370	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61893395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893404	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105113400-105116200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:105114200-105115800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:105114200-105117000	Enhancers	NHLF	lung
4	chr11:105114200-105117200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:105114200-105117200	Enhancers	Hela-S3	cervix
6	chr11:105114400-105116800	Enhancers	HUVEC	blood vessel
7	chr11:105114400-105117000	Enhancers	NHDF-Ad	bronchial
8	chr11:105114600-105116600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:105114800-105115800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:105114800-105115800	Enhancers	Fetal Heart	heart
11	chr11:105114800-105116000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:105114800-105116000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:105114800-105116000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:105114800-105116000	Enhancers	Osteobl	bone
15	chr11:105115000-105115600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:105115000-105115800	Enhancers	NHEK	skin
17	chr11:105115000-105116000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:105115000-105116600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:105115200-105115600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:105115200-105115600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:105115200-105115800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:105115200-105115800	Enhancers	HMEC	breast
23	chr11:105115200-105116000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:105115200-105116000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr11:105115400-105115600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:105115400-105115600	Flanking Active TSS	NH-A	brain
27	chr11:105115400-105115800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:105115400-105115800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:105115400-105115800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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