Variant report

Variant	rs61893915
Chromosome Location	chr11:72259712-72259713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs375448	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61893911	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61893917	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61893918	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
2	nsv897910	chr11:72154529-72281884	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72257400-72260600	Enhancers	Fetal Muscle Leg	muscle
2	chr11:72257600-72260800	Enhancers	Hela-S3	cervix
3	chr11:72258600-72260800	Enhancers	HSMM	muscle
4	chr11:72258600-72261400	Enhancers	HSMMtube	muscle
5	chr11:72259000-72260000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:72259400-72260600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:72259400-72260600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:72259600-72261200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:72259600-72261400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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