Variant report

Variant	rs61893962
Chromosome Location	chr11:50005400-50005401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:50005399-50005449	AG09319	gingival:	n/a
2	chr11:50005399-50005449	NHDF-neo	bronchial:	n/a
3	chr11:50005399-50005449	SAEC	small airway:	n/a
4	chr11:50005399-50005449	SKMC	muscle:	n/a
5	chr11:50005399-50005449	HPAEpiC	pulmonary alveolar:	n/a
6	chr11:50005399-50005449	HMEC	breast:	n/a
7	chr11:50005399-50005449	SK-N-MC	brain:	n/a
8	chr11:50005399-50005449	T-47D	breast:	n/a
9	chr11:50005399-50005449	ProgFib	skin:	n/a
10	chr11:50005399-50005449	NT2-D1	testis:	n/a
11	chr11:50005399-50005449	Caco-2	colon:	n/a
12	chr11:50005399-50005449	HCF	heart:	n/a
13	chr11:50005399-50005449	GM06990	blood:	n/a
14	chr11:50005399-50005449	HL-60	blood:	n/a
15	chr11:50005399-50005449	GM12892	blood:	n/a
16	chr11:50005399-50005449	U87	brain:	n/a
17	chr11:50005399-50005449	RPTEC	kidney:	n/a
18	chr11:50005399-50005449	HRCEpiC	kidney:	n/a
19	chr11:50005399-50005449	HCT-116	colon:	n/a
20	chr11:50005399-50005449	HepG2	liver:	n/a
21	chr11:50005399-50005449	ECC-1	luminal epithelium:	n/a
22	chr11:50005399-50005449	HEEpiC	esophagus:	n/a
23	chr11:50005399-50005449	Jurkat	blood:	n/a
24	chr11:50005399-50005449	AG09309	skin:	n/a
25	chr11:50005399-50005449	HUVEC	blood vessel:	n/a
26	chr11:50005399-50005449	NHBE	bronchial:	n/a
27	chr11:50005399-50005449	AoSMC	blood vessel:	n/a
28	chr11:50005399-50005449	SK-N-SH	brain:	n/a
29	chr11:50005399-50005449	Hepatocyte	liver:	n/a
30	chr11:50005399-50005449	MCF-7	breast:	n/a
31	chr11:50005399-50005449	BJ	skin:	n/a
32	chr11:50005399-50005449	NH-A	brain:	n/a
33	chr11:50005399-50005449	NB4	blood:	n/a
34	chr11:50005399-50005449	HEK293	kidney:	embryo
35	chr11:50005399-50005449	CMK	blood:	n/a
36	chr11:50005399-50005449	AG10803	skin:	n/a
37	chr11:50005399-50005449	HCPEpiC	choroid plexus:	n/a
38	chr11:50005399-50005449	A549	lung:	n/a
39	chr11:50005399-50005449	AG04449	skin:	fetal
40	chr11:50005399-50005449	ovcar-3	ovarian:	n/a
41	chr11:50005399-50005449	HNPCEpiC	eye:	n/a
42	chr11:50005399-50005449	PFSK-1	brain:	n/a
43	chr11:50005399-50005449	HRE	kidney:	n/a
44	chr11:50005399-50005449	HAEpiC	amniotic membrane:	n/a
45	chr11:50005399-50005449	BE2_C	brain:	n/a
46	chr11:50005399-50005449	HIPEpiC	eye:	n/a
47	chr11:50005399-50005449	Hela-S3	cervix:	n/a
48	chr11:50005399-50005449	PrEC	prostate:	n/a
49	chr11:50005399-50005449	HCM	heart:	n/a
50	chr11:50005399-50005449	GM19239	blood:	n/a

No data

Variant related genes	Relation type
OR4C12	CpG island

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1807793	0.85[EUR][1000 genomes]
rs28430465	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28439919	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28806529	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4329694	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55636623	1.00[AMR][1000 genomes]
rs55649412	1.00[AMR][1000 genomes]
rs56193349	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56393832	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61891073	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891075	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891076	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891085	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891086	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891087	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891088	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891129	0.85[EUR][1000 genomes]
rs61891130	0.85[EUR][1000 genomes]
rs61891131	0.81[EUR][1000 genomes]
rs61891147	0.85[EUR][1000 genomes]
rs61891149	0.85[EUR][1000 genomes]
rs61891150	0.85[EUR][1000 genomes]
rs61891151	0.85[EUR][1000 genomes]
rs61893389	0.81[EUR][1000 genomes]
rs61904465	1.00[AMR][1000 genomes]
rs61904467	1.00[AMR][1000 genomes]
rs61904469	1.00[AMR][1000 genomes]
rs61904488	1.00[AMR][1000 genomes]
rs61904515	0.87[AMR][1000 genomes]
rs61905866	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7937964	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897491	chr11:49498923-50058422	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1051021	chr11:49692184-50658777	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2760533	chr11:49699567-50025986	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035961	chr11:49727385-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv33425	chr11:49732291-50058422	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1035638	chr11:49739352-50025974	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037200	chr11:49757490-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1045103	chr11:49769791-50022107	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1048074	chr11:49823455-50302232	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv467876	chr11:49845560-50057854	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv554392	chr11:49845560-50057854	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv554393	chr11:49845560-50122001	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv1036701	chr11:49846590-50769305	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv976454	chr11:49979925-50039194	Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv982945	chr11:49979925-50039194	ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv897498	chr11:49997431-50325741	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv428254	chr11:50002975-50058422	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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