Variant report

Variant	rs61895473
Chromosome Location	chr11:76502241-76502242
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76500135..76502370-chr11:76510962..76513863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261578	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61893547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496000-76506800	Weak transcription	Aorta	Aorta
2	chr11:76496200-76503600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
4	chr11:76496400-76504000	Weak transcription	HSMMtube	muscle
5	chr11:76496600-76504400	Weak transcription	HUVEC	blood vessel
6	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:76496800-76504200	Weak transcription	HSMM	muscle
8	chr11:76496800-76507400	Enhancers	Stomach Mucosa	stomach
9	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:76498000-76503200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:76498000-76504000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:76498200-76502600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:76498400-76505800	Enhancers	Placenta	Placenta
14	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
15	chr11:76499400-76502600	Weak transcription	Osteobl	bone
16	chr11:76499400-76502800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:76499400-76504200	Enhancers	Esophagus	oesophagus
18	chr11:76499600-76502800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:76499800-76502600	Weak transcription	NH-A	brain
20	chr11:76499800-76503200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:76499800-76503800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:76499800-76504200	Weak transcription	Fetal Brain Male	brain
23	chr11:76500000-76502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:76500000-76503000	Weak transcription	NHDF-Ad	bronchial
25	chr11:76500000-76504600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:76500000-76506400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:76500200-76502400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76500200-76502600	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr11:76500200-76503000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:76500200-76503400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:76500200-76503800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:76500200-76504200	Enhancers	HepG2	liver
33	chr11:76500400-76504000	Enhancers	Adipose Nuclei	Adipose
34	chr11:76500400-76504000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:76500400-76504000	Weak transcription	Gastric	stomach
36	chr11:76500400-76504200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:76500400-76504200	Weak transcription	Fetal Lung	lung
38	chr11:76500400-76505600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:76500600-76502400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:76500600-76502400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:76500600-76504000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:76500600-76504000	Weak transcription	Lung	lung
45	chr11:76500600-76504400	Weak transcription	Fetal Heart	heart
46	chr11:76500800-76502400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:76500800-76504200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:76500800-76504400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
50	chr11:76501000-76503000	Weak transcription	Fetal Intestine Large	intestine

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