Variant report

Variant	rs61897924
Chromosome Location	chr11:119903718-119903719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119898837..119900812-chr11:119902975..119904748,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10502234	0.96[ASN][1000 genomes]
rs10892518	0.96[ASN][1000 genomes]
rs10892523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892526	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892527	0.91[ASN][1000 genomes]
rs11217639	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217650	0.96[ASN][1000 genomes]
rs11217651	0.96[ASN][1000 genomes]
rs11217653	0.96[ASN][1000 genomes]
rs11217654	0.92[ASN][1000 genomes]
rs11217662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11493812	0.96[ASN][1000 genomes]
rs11512472	0.96[ASN][1000 genomes]
rs11605106	0.96[ASN][1000 genomes]
rs11607618	0.96[ASN][1000 genomes]
rs11607997	0.83[ASN][1000 genomes]
rs12362929	0.96[ASN][1000 genomes]
rs12363335	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12363889	0.96[ASN][1000 genomes]
rs12365908	0.96[ASN][1000 genomes]
rs12790374	0.96[ASN][1000 genomes]
rs12792065	0.96[ASN][1000 genomes]
rs12799875	0.96[ASN][1000 genomes]
rs12800482	0.96[ASN][1000 genomes]
rs12800844	0.87[ASN][1000 genomes]
rs1319166	0.83[ASN][1000 genomes]
rs1320685	0.87[ASN][1000 genomes]
rs1452840	0.96[ASN][1000 genomes]
rs1452841	0.96[ASN][1000 genomes]
rs1939331	0.96[ASN][1000 genomes]
rs1939332	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939334	0.96[ASN][1000 genomes]
rs1960536	0.96[ASN][1000 genomes]
rs4936507	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56895810	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897925	0.96[ASN][1000 genomes]
rs965312	0.83[ASN][1000 genomes]
rs972534	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119901800-119904000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr11:119901800-119905000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119902000-119904200	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:119902000-119906600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:119902200-119904000	Enhancers	Brain Germinal Matrix	brain
6	chr11:119902400-119907000	Enhancers	Fetal Muscle Leg	muscle
7	chr11:119902600-119903800	Enhancers	Brain Hippocampus Middle	brain
8	chr11:119902600-119904600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:119902800-119904000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:119903000-119905200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:119903000-119905400	Weak transcription	Brain Anterior Caudate	brain
12	chr11:119903000-119906000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:119903200-119905000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:119903400-119905200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:119903600-119904000	Enhancers	Fetal Muscle Trunk	muscle
16	chr11:119903600-119905000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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