Variant report

Variant	rs61898292
Chromosome Location	chr11:120096056-120096057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120088424..120091961-chr11:120094010..120097522,6	K562	blood:
2	chr11:120082525..120086305-chr11:120094464..120096217,3	K562	blood:

Variant related genes	Relation type
ENSG00000184232	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12225131	0.83[EUR][1000 genomes]
rs61898285	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898289	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898290	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120084200-120102600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:120086400-120097000	Weak transcription	NHEK	skin
3	chr11:120089800-120099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:120090800-120099600	Weak transcription	NHDF-Ad	bronchial
5	chr11:120091000-120096600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:120091000-120097400	Weak transcription	NHLF	lung
7	chr11:120091000-120097600	Genic enhancers	Liver	Liver
8	chr11:120091000-120102800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:120091200-120096800	Enhancers	Adipose Nuclei	Adipose
10	chr11:120091200-120097000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:120091800-120097600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:120092600-120096400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:120092800-120097000	Weak transcription	Gastric	stomach
14	chr11:120092800-120102000	Weak transcription	Brain Angular Gyrus	brain
15	chr11:120093000-120096400	Weak transcription	Esophagus	oesophagus
16	chr11:120093600-120100600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:120093800-120096800	Enhancers	Colon Smooth Muscle	Colon
18	chr11:120093800-120096800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:120093800-120097000	Enhancers	Right Ventricle	heart
20	chr11:120094000-120097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:120094000-120097400	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:120094200-120096600	Enhancers	Fetal Muscle Leg	muscle
23	chr11:120094400-120096600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr11:120094400-120096600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr11:120094400-120096800	Enhancers	HUVEC	blood vessel
26	chr11:120094400-120097200	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:120094400-120100200	Strong transcription	HepG2	liver
28	chr11:120094600-120096400	Enhancers	Primary B cells from cord blood	blood
29	chr11:120094600-120096400	Genic enhancers	Rectal Mucosa Donor 29	rectum
30	chr11:120094600-120096600	Enhancers	Right Atrium	heart
31	chr11:120094600-120097400	Enhancers	Left Ventricle	heart
32	chr11:120094600-120097400	Enhancers	Ovary	ovary
33	chr11:120094600-120097800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:120094600-120098400	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr11:120094800-120100800	Weak transcription	Stomach Mucosa	stomach
36	chr11:120095000-120096200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:120095000-120096200	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:120095000-120096600	Enhancers	Duodenum Mucosa	Duodenum
39	chr11:120095000-120097800	Genic enhancers	Fetal Stomach	stomach
40	chr11:120095200-120096200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
41	chr11:120095200-120096400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:120095200-120096600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:120095200-120096600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:120095200-120096600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:120095200-120096800	Enhancers	Placenta	Placenta
46	chr11:120095200-120097800	Enhancers	Brain Hippocampus Middle	brain
47	chr11:120095200-120098000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:120095400-120096200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
49	chr11:120095400-120096200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:120095400-120096400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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