Variant report

Variant	rs61900047
Chromosome Location	chr11:83584642-83584643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11233775	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233777	0.95[EUR][1000 genomes]
rs11233783	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11233785	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233788	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233791	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233798	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233799	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12270625	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12270635	0.92[EUR][1000 genomes]
rs12271229	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12271288	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12271843	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12273942	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12275181	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12275182	0.83[EUR][1000 genomes]
rs12275520	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12276012	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12276017	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12276898	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12277425	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12277476	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12277615	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12279274	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12279522	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12281403	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12281733	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12285971	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12286857	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12286986	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12287752	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12288054	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12288115	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12288204	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12289010	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12289288	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12289636	0.92[EUR][1000 genomes]
rs12290784	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12294501	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12294813	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12295065	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12295183	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12295931	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17486861	0.92[EUR][1000 genomes]
rs17558822	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17558872	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35250361	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs41512247	0.92[EUR][1000 genomes]
rs56274778	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61900044	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61900045	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61900046	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61900051	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61900052	0.88[EUR][1000 genomes]
rs61900053	0.94[EUR][1000 genomes]
rs61901776	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs61901778	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901780	0.92[EUR][1000 genomes]
rs61901781	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61901782	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901783	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901784	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901785	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901786	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901788	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901789	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61901822	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61901823	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61901824	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61901825	0.81[EUR][1000 genomes]
rs66866105	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs68039436	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7105997	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7111282	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7111645	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7126784	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72943850	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9667614	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898018	chr11:83556067-83586526	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898024	chr11:83576460-83602367	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83576000-83586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83577400-83606800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83578000-83606800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83582800-83585400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:83584400-83585200	Strong transcription	Brain Angular Gyrus	brain
6	chr11:83584400-83585200	Strong transcription	Brain Anterior Caudate	brain
7	chr11:83584400-83585200	Strong transcription	Brain Hippocampus Middle	brain
8	chr11:83584600-83585200	Strong transcription	Brain Cingulate Gyrus	brain

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