Variant report

Variant	rs61901538
Chromosome Location	chr11:74310459-74310460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74309816..74311347-chr11:74320760..74323424,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899012	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826567	0.85[AMR][1000 genomes]
rs12364155	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12801024	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34060848	1.00[ASN][1000 genomes]
rs34222102	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34702292	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34835838	0.98[ASN][1000 genomes]
rs35165052	0.82[ASN][1000 genomes]
rs36005373	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3741127	0.90[ASN][1000 genomes]
rs61901537	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592573	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125480	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932731	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939226	0.97[ASN][1000 genomes]
rs7943504	0.83[AMR][1000 genomes]
rs7944514	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9919663	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv832209	chr11:74155883-74329119	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv897914	chr11:74266026-74327614	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv897915	chr11:74269817-74327614	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74304400-74311000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74304400-74316200	Weak transcription	Aorta	Aorta
3	chr11:74304400-74345600	Weak transcription	Gastric	stomach
4	chr11:74304600-74312200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:74304600-74313600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:74304600-74316200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:74304600-74316200	Weak transcription	Ovary	ovary
8	chr11:74304600-74316400	Weak transcription	Small Intestine	intestine
9	chr11:74304600-74323600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:74304600-74323600	Weak transcription	HSMMtube	muscle
11	chr11:74304600-74323800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:74304600-74331400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:74304600-74345600	Weak transcription	Esophagus	oesophagus
14	chr11:74304600-74373800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:74304800-74316200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:74304800-74316400	Weak transcription	Pancreas	Pancrea
17	chr11:74304800-74317200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:74304800-74317400	Weak transcription	HSMM	muscle
19	chr11:74304800-74323600	Weak transcription	Stomach Mucosa	stomach
20	chr11:74304800-74324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:74304800-74336200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:74304800-74357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:74304800-74361400	Weak transcription	Colonic Mucosa	Colon
24	chr11:74305000-74310800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:74305000-74313800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:74305000-74315000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:74305000-74315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:74305000-74315800	Weak transcription	NHLF	lung
29	chr11:74305000-74322200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:74305000-74323000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:74305200-74311600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:74305200-74313200	Weak transcription	Brain Germinal Matrix	brain
33	chr11:74305200-74316000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:74305200-74316400	Weak transcription	NHEK	skin
35	chr11:74305200-74318200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:74305200-74323600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:74305200-74323600	Weak transcription	HUVEC	blood vessel
38	chr11:74305200-74331800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:74305400-74311000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:74305400-74316200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:74305400-74316600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:74305400-74317000	Weak transcription	Fetal Heart	heart
43	chr11:74305400-74318400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:74305400-74319800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:74305400-74322600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:74305600-74311000	Strong transcription	Hela-S3	cervix
47	chr11:74305600-74313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:74305600-74313600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:74305600-74315600	Weak transcription	Osteobl	bone
50	chr11:74305600-74320800	Weak transcription	HepG2	liver

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