Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:59475791-59476617	SK-N-SH	brain:	n/a	chr11:59476180-59476188
2	TCF12	chr11:59475960-59476584	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59476148..59479085-chr11:59479730..59481553,2	K562	blood:

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11230056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230061	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs497890	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7926513	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937162	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59472400-59478200	Enhancers	NHEK	skin
2	chr11:59472600-59476800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:59472800-59476800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:59472800-59478200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:59472800-59478200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:59473400-59476800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:59473600-59476600	Enhancers	Placenta	Placenta
8	chr11:59473600-59476600	Enhancers	HSMM	muscle
9	chr11:59473600-59476800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:59473800-59478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:59475000-59477000	Weak transcription	Osteobl	bone
12	chr11:59475000-59477800	Weak transcription	Hela-S3	cervix
13	chr11:59475400-59483200	Weak transcription	K562	blood
14	chr11:59476400-59476600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:59476400-59476600	Enhancers	NH-A	brain
16	chr11:59476400-59477200	Enhancers	NHLF	lung
17	chr11:59476400-59477800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:59476400-59477800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:59476400-59477800	Weak transcription	A549	lung
20	chr11:59476400-59478000	Weak transcription	HMEC	breast

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